C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043990 Edc3-001 ENSMUSG00000038957 10090 + 9:57708540-57752499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043990
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043990 3.166±0.54 4.573±0.88 4.826±1.71 3.489±1.06 3.415±0.60 1.291±0.21 1.778±0.30 4.414±2.62 4.683±0.17 2.110±0.29 4.682±1.21 3.816±0.91 1.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315127 EDC3-001 protein_coding Homo_sapiens 0 2056
ENST00000345005 CLK3-001 protein_coding Homo_sapiens 0 614
ENST00000395066 CLK3-003 protein_coding Homo_sapiens 0 516
ENST00000426797 EDC3-003 protein_coding Homo_sapiens 0 1967
ENST00000454830 CLK3-008 retained_intron Homo_sapiens 0 612
ENST00000483723 CLK3-002 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000561673 CLK3-025 processed_transcript Homo_sapiens 2e-37 159
ENST00000562078 CLK3-004 retained_intron Homo_sapiens 0 501
ENST00000562174 EDC3-005 protein_coding Homo_sapiens 0 616
ENST00000562626 CLK3-022 retained_intron Homo_sapiens 0 241
ENST00000562974 EDC3-007 protein_coding Homo_sapiens 0 213
ENST00000563009 EDC3-016 protein_coding Homo_sapiens 0 953
ENST00000563292 EDC3-014 protein_coding Homo_sapiens 0 346
ENST00000563418 CLK3-024 protein_coding Homo_sapiens 4e-36 159
ENST00000563842 CLK3-019 protein_coding Homo_sapiens 9e-23 111
ENST00000564468 CLK3-020 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000565602 EDC3-002 nonsense_mediated_decay Homo_sapiens 0 1410
ENST00000566219 EDC3-009 protein_coding Homo_sapiens 0 665
ENST00000566243 EDC3-017 protein_coding Homo_sapiens 0 499
ENST00000566828 EDC3-018 protein_coding Homo_sapiens 0 466
ENST00000566926 CLK3-023 protein_coding Homo_sapiens 0 241
ENST00000567805 CLK3-021 processed_transcript Homo_sapiens 0 241
ENST00000567813 EDC3-015 protein_coding Homo_sapiens 0 217
ENST00000568176 EDC3-004 protein_coding Homo_sapiens 0 1965
ENST00000568232 CLK3-005 retained_intron Homo_sapiens 0 869
ENST00000569007 EDC3-011 retained_intron Homo_sapiens 0 233
ENST00000569406 CLK3-006 retained_intron Homo_sapiens 0 608
ENST00000569561 EDC3-010 protein_coding Homo_sapiens 0 710
ENST00000569606 EDC3-006 retained_intron Homo_sapiens 0 582
ENST00000570138 EDC3-013 protein_coding Homo_sapiens 0 370
ENST00000616744 RP11-471J7.1-001 unprocessed_pseudogene Homo_sapiens 0 239

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