C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: whirlin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039137 Whrn 10090 - 4:63414910-63495991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063650 Whrn-001 63414910-63495951 protein_coding
  ENSMUST00000063672 Whrn-017 63431433-63495991 protein_coding
  ENSMUST00000084510 Whrn-005 63414910-63495951 protein_coding
  ENSMUST00000095037 Whrn-008 63414910-63495951 protein_coding
  ENSMUST00000095038 Whrn-006 63414910-63495951 protein_coding
  ENSMUST00000102867 Whrn-002 63414910-63495951 protein_coding
  ENSMUST00000107393 Whrn-004 63414910-63495951 protein_coding
  ENSMUST00000119294 Whrn-007 63414910-63495951 protein_coding
  ENSMUST00000124016 Whrn-011 63414910-63493600 processed_transcript
  ENSMUST00000133425 Whrn-014 63460163-63494759 protein_coding
  ENSMUST00000140720 Whrn-015 63460820-63494677 retained_intron
  ENSMUST00000144965 Whrn-016 63436229-63472740 protein_coding
  ENSMUST00000145133 Whrn-010 63414910-63433322 retained_intron
  ENSMUST00000145630 Whrn-012 63419469-63431929 nonsense_mediated_decay
  ENSMUST00000148957 Whrn-003 63425712-63432002 processed_transcript
  ENSMUST00000153307 Whrn-013 63434801-63461302 retained_intron
  ENSMUST00000155058 Whrn-009 63414910-63433322 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063650ENSMUST00000063672ENSMUST00000084510ENSMUST00000095037ENSMUST00000095038ENSMUST00000102867ENSMUST00000107393ENSMUST00000119294ENSMUST00000124016ENSMUST00000133425ENSMUST00000148957ENSMUST00000153307ENSMUST00000155058
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063650 0.788±0.10 5.825±1.70 0.432±0.13 1.667±0.00 N/A 0.904±0.00 N/A 1.482±0.48 0.240±0.05 0.477±0.24 0.220±0.10 3.261±0.65 0.134±0.06 2.080±0.53
ENSMUST00000063672 0.860±0.00 4.758±1.23 N/A N/A 1.224±0.00 1.891±0.00 N/A N/A 0.164±0.05 0.422±0.00 0.236±0.00 2.854±0.25 0.165±0.00 N/A
ENSMUST00000084510 0.547±0.00 N/A N/A 2.084±0.00 N/A 1.070±0.00 2.194±0.23 N/A 0.165±0.00 N/A N/A N/A N/A 1.756±0.52
ENSMUST00000095037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A 0.351±0.00 0.503±0.00
ENSMUST00000095038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A
ENSMUST00000102867 0.509±0.35 N/A 0.246±0.00 2.948±0.67 0.544±0.00 1.083±0.00 N/A 1.497±0.42 0.176±0.08 N/A 0.256±0.06 1.819±0.40 0.251±0.24 2.657±0.94
ENSMUST00000107393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.346±0.00 N/A N/A N/A
ENSMUST00000119294 N/A 4.789±0.00 N/A N/A N/A N/A N/A 2.795±0.00 0.081±0.04 N/A N/A 3.396±0.36 N/A N/A
ENSMUST00000124016 1.091±0.00 N/A 0.500±0.00 9.823±0.00 0.238±0.00 N/A 3.959±0.25 1.834±0.71 0.160±0.00 0.564±0.00 0.246±0.10 5.530±0.66 0.318±0.13 N/A
ENSMUST00000133425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.403±0.00
ENSMUST00000148957 N/A N/A N/A N/A 0.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153307 N/A N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155058 1.978±0.43 8.938±1.66 0.692±0.00 3.114±0.57 0.748±0.35 2.931±0.62 N/A 1.327±0.00 0.145±0.08 0.510±0.00 0.082±0.00 3.992±0.68 0.125±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C9 CIL_0002C9_0003 CGP 4:63367125-63495991
CIL_0004P9 CIL_0004P9_0002 CGP 4:63414910-63550750

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0002142 IDA stereocilia ankle link complex
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005884 IDA actin filament
GO:0005929 IDA cilium
GO:0007605 IMP sensory perception of sound
GO:0010628 IDA positive regulation of gene expression
GO:0032391 IDA photoreceptor connecting cilium
GO:0032420 IDA stereocilium
GO:0032421 IDA stereocilium bundle
GO:0050953 IEA sensory perception of light stimulus
GO:0060122 IMP inner ear receptor stereocilium organization
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075362 dfnb31a deafness, autosomal recessive 31a protein_coding Danio_rerio
ENSG00000095397 DFNB31 deafness, autosomal recessive 31 protein_coding Homo_sapiens

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