C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: whirlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102867 Whrn-002 ENSMUSG00000039137 10090 - 4:63414910-63495951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000102867
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000102867 0.509±0.35 0.246±0.00 2.948±0.67 0.544±0.00 1.083±0.00 1.497±0.42 0.176±0.08 0.256±0.06 1.819±0.40 0.251±0.24 2.657±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C9 CIL_0002C9_0003 CGP 4:63367125-63495991
CIL_0004P9 CIL_0004P9_0002 CGP 4:63414910-63550750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002142 IDA stereocilia ankle link complex
GO:0005515 IPI protein binding
GO:0005884 IDA actin filament
GO:0005929 IDA cilium
GO:0007605 IMP sensory perception of sound
GO:0010628 IDA positive regulation of gene expression
GO:0032391 IDA photoreceptor connecting cilium
GO:0032420 IDA stereocilium
GO:0032421 IDA stereocilium bundle
GO:0060122 IMP inner ear receptor stereocilium organization
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265134 DFNB31-001 protein_coding Homo_sapiens 0 2047
ENST00000362057 DFNB31-004 protein_coding Homo_sapiens 0 3035
ENST00000374057 DFNB31-005 protein_coding Homo_sapiens 0 1225
ENST00000374059 DFNB31-002 protein_coding Homo_sapiens 0 1400
ENST00000480518 DFNB31-003 processed_transcript Homo_sapiens 0 213

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