C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: whirlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063650 Whrn-001 ENSMUSG00000039137 10090 - 4:63414910-63495951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063650
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063650 0.788±0.10 5.825±1.70 0.432±0.13 1.667±0.00 0.904±0.00 1.482±0.48 0.240±0.05 0.477±0.24 0.220±0.10 3.261±0.65 0.134±0.06 2.080±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C9 CIL_0002C9_0003 CGP 4:63367125-63495991
CIL_0004P9 CIL_0004P9_0002 CGP 4:63414910-63550750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002142 IDA stereocilia ankle link complex
GO:0005515 IPI protein binding
GO:0005884 IDA actin filament
GO:0005929 IDA cilium
GO:0007605 IMP sensory perception of sound
GO:0010628 IDA positive regulation of gene expression
GO:0032391 IDA photoreceptor connecting cilium
GO:0032420 IDA stereocilium
GO:0032421 IDA stereocilium bundle
GO:0060122 IMP inner ear receptor stereocilium organization
GO:1990075 IDA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265134 DFNB31-001 protein_coding Homo_sapiens 0 2065
ENST00000362057 DFNB31-004 protein_coding Homo_sapiens 0 3053
ENST00000374057 DFNB31-005 protein_coding Homo_sapiens 0 1225
ENST00000374059 DFNB31-002 protein_coding Homo_sapiens 0 1419
ENST00000480518 DFNB31-003 processed_transcript Homo_sapiens 0 213

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