C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin-specific chaperone d
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039230 Tbcd 10090 + 11:121451949-121617164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103013 Tbcd-001 121451949-121617164 protein_coding
  ENSMUST00000106093 Tbcd-002 121488321-121497051 protein_coding
  ENSMUST00000125167 Tbcd-008 121500036-121576182 nonsense_mediated_decay
  ENSMUST00000139414 Tbcd-003 121601619-121617163 processed_transcript
  ENSMUST00000147470 Tbcd-007 121550111-121590383 retained_intron
  ENSMUST00000147560 Tbcd-006 121544201-121590406 processed_transcript
  ENSMUST00000151666 Tbcd-004 121601705-121617163 processed_transcript
  ENSMUST00000155666 Tbcd-005 121598316-121617163 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103013ENSMUST00000139414ENSMUST00000147470ENSMUST00000147560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103013 14.010±0.22 8.892±0.59 11.912±0.06 17.190±6.94 9.092±0.76 8.941±1.58 3.042±0.60 7.368±0.37 7.811±3.97 9.557±0.78 3.580±0.27 13.035±3.19 11.407±2.10 3.911±1.27
ENSMUST00000139414 N/A N/A N/A N/A N/A N/A N/A N/A 4.634±0.10 N/A N/A N/A N/A N/A
ENSMUST00000147470 N/A N/A N/A N/A 20.824±0.00 N/A N/A N/A N/A N/A N/A 46.026±11.25 N/A N/A
ENSMUST00000147560 N/A N/A N/A N/A 30.606±7.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043Z CIL_00043Z_0003 CGP 11:121434913-121617164
CIL_00025M CIL_00025M_0003 CGP 11:121451949-121617164

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 ISS GTPase activator activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005912 ISS adherens junction
GO:0005923 ISS tight junction
GO:0006457 ISS protein folding
GO:0007023 ISS post-chaperonin tubulin folding pathway
GO:0010812 ISS negative regulation of cell-substrate adhesion
GO:0016328 ISS lateral plasma membrane
GO:0031115 ISS negative regulation of microtubule polymerization
GO:0034333 ISS adherens junction assembly
GO:0043547 ISS positive regulation of GTPase activity
GO:0048487 ISS beta-tubulin binding
GO:0070830 ISS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040099 tbcd tubulin-specific chaperone d protein_coding Danio_rerio
ENSG00000141556 TBCD tubulin folding cofactor D protein_coding Homo_sapiens

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