C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: suppressor of variegation 3-9 homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039231 Suv39h1 10090 - X:8061171-8074760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115636 Suv39h1-004 8067409-8074729 protein_coding
  ENSMUST00000115637 Suv39h1-002 8061435-8074258 protein_coding
  ENSMUST00000115638 Suv39h1-001 8061171-8074760 protein_coding
  ENSMUST00000127617 Suv39h1-003 8070429-8074313 retained_intron
  ENSMUST00000150095 Suv39h1-005 8061426-8074621 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115636ENSMUST00000115637ENSMUST00000115638ENSMUST00000150095
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115636 N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A N/A N/A N/A 0.791±0.37
ENSMUST00000115637 5.188±1.47 3.953±0.43 2.920±0.30 5.688±2.48 5.525±1.37 4.039±0.73 1.547±0.08 3.596±0.37 7.565±6.28 4.738±0.42 1.323±0.54 12.069±4.13 8.720±4.12 3.024±0.78
ENSMUST00000115638 N/A N/A N/A 1.683±0.00 N/A N/A 0.219±0.00 N/A 3.659±1.80 0.775±0.00 0.511±0.09 N/A 4.140±1.56 0.998±0.40
ENSMUST00000150095 2.463±1.28 1.305±0.08 1.920±0.09 3.517±2.16 1.773±0.73 2.098±0.45 0.447±0.15 0.963±0.06 4.479±3.37 1.643±0.59 0.550±0.20 4.231±1.41 4.531±0.85 0.582±0.38

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000183 IEA chromatin silencing at rDNA
GO:0000775 IEA chromosome, centromeric region
GO:0000792 IDA heterochromatin
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005677 IDA chromatin silencing complex
GO:0005720 TAS nuclear heterochromatin
GO:0006323 TAS DNA packaging
GO:0006342 TAS chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007049 IEA cell cycle
GO:0008168 IDA methyltransferase activity
GO:0008270 IEA zinc ion binding
GO:0008276 TAS protein methyltransferase activity
GO:0008757 IEA S-adenosylmethionine-dependent methyltransferase activity
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0030154 IEA cell differentiation
GO:0033553 IEA rDNA heterochromatin
GO:0034968 IGI histone lysine methylation
GO:0036123 IMP histone H3-K9 dimethylation
GO:0036124 IMP histone H3-K9 trimethylation
GO:0042054 IEA histone methyltransferase activity
GO:0042754 IMP negative regulation of circadian rhythm
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046974 IDA histone methyltransferase activity (H3-K9 specific)
GO:0047485 IEA protein N-terminus binding
GO:0048511 IEA rhythmic process
GO:0051567 IGI histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026799 suv39h1a suppressor of variegation 3-9 homolog 1a protein_coding Danio_rerio
ENSDARG00000055753 suv39h1b suppressor of variegation 3-9 homolog 1b protein_coding Danio_rerio
ENSG00000101945 SUV39H1 suppressor of variegation 3-9 homolog 1 (Drosophila) protein_coding Homo_sapiens

Loading