C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptopodin 2-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039376 Synpo2l 10090 - 14:20658946-20668354 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057090 Synpo2l-001 20658946-20668306 protein_coding
  ENSMUST00000117386 Synpo2l-002 20659418-20668354 protein_coding
  ENSMUST00000119483 Synpo2l-003 20658948-20664574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057090ENSMUST00000117386ENSMUST00000119483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057090 0.055±0.03 N/A 0.018±0.00 0.047±0.00 2.271±0.48 N/A 6.737±2.15 0.302±0.12 0.023±0.02 0.399±0.23 18.348±1.87 0.110±0.03 0.071±0.04 0.118±0.10
ENSMUST00000117386 0.077±0.04 0.058±0.03 0.020±0.00 N/A 1.239±1.50 0.058±0.03 9.272±1.04 0.235±0.13 0.032±0.02 0.554±0.33 14.143±2.72 0.082±0.01 0.091±0.08 0.081±0.03
ENSMUST00000119483 0.132±0.00 0.122±0.10 0.018±0.00 0.099±0.00 0.841±0.79 0.066±0.04 6.403±1.39 0.247±0.07 0.125±0.17 0.360±0.06 10.182±2.00 0.108±0.07 0.133±0.06 0.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000289 CIL_000289_0003 CGP 14:20649102-20668354

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0030018 IDA Z disc

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077293 SYNPO2L (1 of 2) synaptopodin 2-like protein_coding Danio_rerio
ENSDARG00000078696 synpo2lb synaptopodin 2-like b protein_coding Danio_rerio
ENSG00000166317 SYNPO2L synaptopodin 2-like protein_coding Homo_sapiens

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