C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117386 Synpo2l-002 ENSMUSG00000039376 10090 - 14:20659418-20668354 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117386
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117386 0.077±0.04 0.058±0.03 0.020±0.00 1.239±1.50 0.058±0.03 9.272±1.04 0.235±0.13 0.032±0.02 0.554±0.33 14.143±2.72 0.082±0.01 0.091±0.08 0.081±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000289 CIL_000289_0003 CGP 14:20649102-20668354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008150 ND biological_process
GO:0030018 IDA Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113978 synpo2lb-201 protein_coding Danio_rerio 0.00007 55
ENSDART00000153214 synpo2lb-001 protein_coding Danio_rerio 0.00007 55
ENST00000372873 SYNPO2L-001 protein_coding Homo_sapiens 0 2047
ENST00000394810 SYNPO2L-003 protein_coding Homo_sapiens 0 3092
ENST00000606523 SYNPO2L-004 protein_coding Homo_sapiens 0 460

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