C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057090 Synpo2l-001 ENSMUSG00000039376 10090 - 14:20658946-20668306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057090
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057090 0.055±0.03 0.018±0.00 0.047±0.00 2.271±0.48 6.737±2.15 0.302±0.12 0.023±0.02 0.399±0.23 18.348±1.87 0.110±0.03 0.071±0.04 0.118±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000289 CIL_000289_0003 CGP 14:20649102-20668354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0030018 IDA Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113978 synpo2lb-201 protein_coding Danio_rerio 0.00008 55
ENSDART00000153214 synpo2lb-001 protein_coding Danio_rerio 0.00008 55
ENST00000372873 SYNPO2L-001 protein_coding Homo_sapiens 0 2047
ENST00000394810 SYNPO2L-003 protein_coding Homo_sapiens 0 3007
ENST00000602469 DMWD-008 retained_intron Homo_sapiens 0.00000000004 73
ENST00000606523 SYNPO2L-004 protein_coding Homo_sapiens 0 460

Loading