C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP18 pre-mRNA processing factor 18 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039449 Prpf18 10090 - 2:4622058-4652113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035721 Prpf18-001 4622058-4652086 protein_coding
  ENSMUST00000140818 Prpf18-005 4638934-4652087 processed_transcript
  ENSMUST00000144650 Prpf18-004 4643687-4652103 processed_transcript
  ENSMUST00000152362 Prpf18-002 4624028-4652113 protein_coding
  ENSMUST00000153881 Prpf18-003 4623937-4652106 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035721ENSMUST00000140818ENSMUST00000144650ENSMUST00000152362ENSMUST00000153881
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035721 1.466±0.31 3.936±0.52 7.337±2.88 6.505±0.46 1.688±0.55 1.186±0.00 3.361±2.36 1.844±0.38 6.533±2.39 3.403±1.73 1.856±0.42 4.461±3.01 11.245±2.51 1.323±0.57
ENSMUST00000140818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.755±0.00 31.719±0.00 27.683±0.00
ENSMUST00000144650 N/A N/A N/A 27.906±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152362 N/A N/A N/A 8.831±0.00 N/A N/A N/A N/A 4.429±0.00 N/A N/A 11.943±0.00 17.676±12.25 4.007±3.44
ENSMUST00000153881 N/A N/A N/A 3.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000801 CIL_000801_0002 VISTA 2:4039658-4641457
CIL_000871 CIL_000871_0002 VISTA 2:4048338-4649353
CIL_000964 CIL_000964_0002 VISTA 2:4061908-4662689
CIL_000966 CIL_000966_0002 VISTA 2:4256144-4857875
CIL_000965 CIL_000965_0002 VISTA 2:4287585-4888762
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019870 IEA potassium channel inhibitor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058306 prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) protein_coding Danio_rerio
ENSG00000165630 PRPF18 pre-mRNA processing factor 18 protein_coding Homo_sapiens

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