C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165630 PRPF18 9606 + 10:13586927-13630868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320054 PRPF18-002 13586968-13611652 protein_coding
  ENST00000378572 PRPF18-001 13586927-13630868 protein_coding
  ENST00000417658 PRPF18-003 13586939-13614060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320054ENST00000378572ENST00000417658
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320054 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.466±10.00 26.048±0.00 52.525±0.00
ENST00000378572 10.231±0.00 9.917±0.00 10.904±0.00 7.008±3.16 4.950±0.95 7.816±4.47 7.476±1.91 4.726±0.00 3.718±0.00 11.051±3.80 9.711±4.27 20.704±4.60
ENST00000417658 N/A N/A N/A N/A N/A N/A N/A N/A 3.269±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_000965 CIL_000965_0001 VISTA 10:13372414-13973663
CIL_000966 CIL_000966_0001 VISTA 10:13410200-14012149
CIL_00045D CIL_00045D_0002 CGP 10:13438484-13630868

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 TAS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019870 IEA potassium channel inhibitor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058306 prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000039449 Prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) protein_coding Mus_musculus

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