C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP18 pre-mRNA processing factor 18 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035721 Prpf18-001 ENSMUSG00000039449 10090 - 2:4622058-4652086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035721 1.466±0.31 3.936±0.52 7.337±2.88 6.505±0.46 1.688±0.55 1.186±0.00 3.361±2.36 1.844±0.38 6.533±2.39 3.403±1.73 1.856±0.42 4.461±3.01 11.245±2.51 1.323±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000801 CIL_000801_0002 VISTA 2:4039658-4641457
CIL_000871 CIL_000871_0002 VISTA 2:4048338-4649353
CIL_000964 CIL_000964_0002 VISTA 2:4061908-4662689
CIL_000966 CIL_000966_0002 VISTA 2:4256144-4857875
CIL_000965 CIL_000965_0002 VISTA 2:4287585-4888762
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019870 IEA potassium channel inhibitor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320054 PRPF18-002 protein_coding Homo_sapiens 0 571
ENST00000378572 PRPF18-001 protein_coding Homo_sapiens 0 1351
ENST00000417658 PRPF18-003 protein_coding Homo_sapiens 0 789
ENST00000601460 RP11-295P9.3-007 protein_coding Homo_sapiens 0 765

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