C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000965_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm423 VISTA 9606 10:13372414-13973663
GeneTranscriptPositionBiotype
ENSG00000165630 (PRPF18)
pre-mRNA processing factor 18 		ENST00000320054 (PRPF18-002) 13586968-13611652 protein_coding
ENST00000378572 (PRPF18-001) 13586927-13630868 protein_coding
ENST00000417658 (PRPF18-003) 13586939-13614060 protein_coding
ENSG00000199407 (RNA5SP301)
RNA, 5S ribosomal pseudogene 301 		ENST00000362537 (RNA5SP301-201) 13727796-13727916 rRNA
ENSG00000202508 (Y_RNA)
Y RNA 		ENST00000365638 (Y_RNA.1-578) 13511206-13511313 misc_RNA
ENSG00000215227 (NUTF2P5)
nuclear transport factor 2 pseudogene 5 		ENST00000475013 (NUTF2P5-001) 13870797-13871175 processed_pseudogene
ENSG00000222235 (AL157392.1)
 ENST00000410303 (AL157392.1-201) 13704978-13705072 miRNA
ENSG00000225112 (RP11-295P9.6)
 ENST00000412388 (RP11-295P9.6-001) 13710415-13712054 antisense
ENSG00000233256 (RP11-445K13.2)
 ENST00000448272 (RP11-445K13.2-001) 13415202-13423133 antisense
ENSG00000234091 (RP11-353M9.1)
 ENST00000449462 (RP11-353M9.1-001) 13729383-13756200 antisense
ENSG00000268549 (RP11-295P9.8)
 ENST00000600850 (RP11-295P9.8-001) 13682521-13684874 antisense
ENSG00000273474 (RP11-295P9.12)
 ENST00000609756 (RP11-295P9.12-001) 13675646-13675990 antisense
CIL_000965_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm423 VISTA 10090 2:4287585-4888762
GeneTranscriptPositionBiotype
ENSMUSG00000026657 (Frmd4a)
FERM domain containing 4A 		ENSMUST00000075767 (Frmd4a-001) 4400975-4614043 protein_coding
ENSMUST00000091497 (Frmd4a-007) 4152872-4613942 protein_coding
ENSMUST00000115037 (Frmd4a-016) 4389614-4529798 protein_coding
ENSMUST00000115039 (Frmd4a-002) 4401471-4537735 retained_intron
ENSMUST00000123919 (Frmd4a-008) 4473194-4498103 retained_intron
ENSMUST00000132710 (Frmd4a-012) 4152863-4171425 processed_transcript
ENSMUST00000137809 (Frmd4a-011) 4017734-4021904 retained_intron
ENSMUST00000138735 (Frmd4a-010) 4017717-4167006 processed_transcript
ENSMUST00000141746 (Frmd4a-003) 4389616-4433512 retained_intron
ENSMUST00000142452 (Frmd4a-005) 4559775-4588179 retained_intron
ENSMUST00000147156 (Frmd4a-004) 4300885-4538897 retained_intron
ENSMUST00000153160 (Frmd4a-006) 4559754-4597989 retained_intron
ENSMUST00000175669 (Frmd4a-009) 4300518-4572439 protein_coding
ENSMUST00000175944 (Frmd4a-014) 4332466-4594640 protein_coding
ENSMUST00000176803 (Frmd4a-018) 4301003-4560260 nonsense_mediated_decay
ENSMUST00000176828 (Frmd4a-015) 4559756-4612584 protein_coding
ENSMUST00000176864 (Frmd4a-019) 4566176-4594676 nonsense_mediated_decay
ENSMUST00000176962 (Frmd4a-017) 4401437-4431364 retained_intron
ENSMUST00000177457 (Frmd4a-013) 4017744-4614041 protein_coding
ENSMUSG00000026662 (Sephs1)
selenophosphate synthetase 1 		ENSMUST00000027973 (Sephs1-001) 4881564-4910557 protein_coding
ENSMUST00000115019 (Sephs1-002) 4882245-4908137 protein_coding
ENSMUST00000140045 (Sephs1-004) 4884384-4905533 processed_transcript
ENSMUST00000144565 (Sephs1-003) 4884057-4889216 processed_transcript
ENSMUSG00000039449 (Prpf18)
PRP18 pre-mRNA processing factor 18 homolog (yeast) 		ENSMUST00000035721 (Prpf18-001) 4622058-4652086 protein_coding
ENSMUST00000140818 (Prpf18-005) 4638934-4652087 processed_transcript
ENSMUST00000144650 (Prpf18-004) 4643687-4652103 processed_transcript
ENSMUST00000152362 (Prpf18-002) 4624028-4652113 protein_coding
ENSMUST00000153881 (Prpf18-003) 4623937-4652106 processed_transcript
ENSMUSG00000048186 (Bend7)
BEN domain containing 7 		ENSMUST00000056914 (Bend7-001) 4718145-4800925 protein_coding
ENSMUST00000115022 (Bend7-002) 4717834-4788933 protein_coding
ENSMUST00000138322 (Bend7-004) 4752717-4802142 processed_transcript
ENSMUST00000184139 (Bend7-003) 4717831-4800563 protein_coding
ENSMUSG00000083378 (Gm13196)
predicted gene 13196 		ENSMUST00000118297 (Gm13196-001) 4700238-4700616 processed_pseudogene
ENSMUSG00000083407 (Gm13176)
predicted gene 13176 		ENSMUST00000117910 (Gm13176-001) 4834136-4834612 processed_pseudogene
ENSMUSG00000086874 (Gm13175)
predicted gene 13175 		ENSMUST00000139479 (Gm13175-001) 4458434-4466670 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000965_0001ENSG00000165630ENST00000320054ENST00000378572ENST00000417658ENSG00000199407ENST00000362537ENSG00000202508ENST00000365638ENSG00000215227ENST00000475013ENSG00000222235ENST00000410303ENSG00000225112ENST00000412388ENSG00000233256ENST00000448272ENSG00000234091ENST00000449462ENSG00000268549ENST00000600850ENSG00000273474ENST00000609756CIL_000965_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000965_0001ENSG00000165630ENST00000320054ENST00000378572ENST00000417658ENSG00000199407ENST00000362537ENSG00000202508ENST00000365638ENSG00000215227ENST00000475013ENSG00000222235ENST00000410303ENSG00000225112ENST00000412388ENSG00000233256ENST00000448272ENSG00000234091ENST00000449462ENSG00000268549ENST00000600850ENSG00000273474ENST00000609756CIL_000965_0002ENSMUSG00000026657ENSMUST00000075767ENSMUST00000091497ENSMUST00000176828ENSMUST00000177457ENSMUSG00000026662ENSMUST00000027973ENSMUST00000115019ENSMUST00000140045ENSMUSG00000039449ENSMUST00000035721ENSMUST00000140818ENSMUST00000144650ENSMUST00000152362ENSMUST00000153881ENSMUSG00000048186ENSMUST00000056914ENSMUST00000115022ENSMUST00000138322ENSMUST00000184139ENSMUSG00000083378ENSMUST00000118297ENSMUSG00000083407ENSMUST00000117910ENSMUSG00000086874ENSMUST00000139479
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165630 ENST00000320054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.466±10.00 26.048±0.00 52.525±0.00
ENST00000378572 10.231±0.00 9.917±0.00 N/A N/A 10.904±0.00 7.008±3.16 4.950±0.95 7.816±4.47 7.476±1.91 4.726±0.00 3.718±0.00 11.051±3.80 9.711±4.27 20.704±4.60
ENST00000417658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.269±0.00 N/A N/A N/A
ENSG00000199407 ENST00000362537 N/A N/A N/A N/A N/A N/A 8.164±7.96 0.659±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000202508 ENST00000365638 0.775±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215227 ENST00000475013 N/A N/A N/A N/A 0.044±0.00 N/A 0.850±0.00 N/A N/A N/A N/A 0.207±0.00 N/A N/A
ENSG00000222235 ENST00000410303 N/A 0.809±0.00 N/A N/A N/A N/A 0.254±0.00 1.355±0.00 N/A N/A N/A N/A N/A 0.245±0.00
ENSG00000225112 ENST00000412388 N/A 0.610±0.00 N/A 0.182±0.00 N/A N/A N/A N/A N/A 0.124±0.01 N/A N/A N/A 0.249±0.00
ENSG00000233256 ENST00000448272 N/A N/A N/A N/A 0.081±0.00 N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A 0.063±0.00
ENSG00000234091 ENST00000449462 N/A 0.078±0.00 N/A 0.129±0.00 0.039±0.00 N/A N/A 0.452±0.27 1.062±0.00 N/A 0.188±0.00 N/A N/A 0.182±0.00
ENSG00000268549 ENST00000600850 0.284±0.00 0.915±0.00 0.645±0.00 0.272±0.08 0.471±0.00 0.308±0.18 0.183±0.11 0.386±0.00 0.161±0.03 0.623±0.27 0.045±0.00 0.269±0.17 0.124±0.10 0.127±0.04
ENSG00000273474 ENST00000609756 0.083±0.00 0.318±0.00 N/A 0.049±0.00 0.216±0.00 0.225±0.20 0.099±0.00 0.184±0.00 0.021±0.00 0.235±0.00 N/A 0.320±0.24 0.149±0.02 0.082±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026657 ENSMUST00000075767 N/A 0.714±0.00 0.836±0.00 14.837±1.79 N/A N/A 1.574±0.06 N/A 2.234±0.00 N/A 0.083±0.00 N/A 1.440±0.00 0.570±0.15
ENSMUST00000091497 2.285±0.36 0.527±0.00 2.287±0.53 7.167±0.87 1.063±0.21 0.711±0.09 1.108±0.00 0.784±0.12 2.741±2.57 5.316±1.03 0.192±0.06 1.482±0.05 6.482±0.16 0.902±0.00
ENSMUST00000115037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176828 3.620±0.76 4.019±1.13 0.971±0.26 8.308±0.00 6.260±2.99 3.951±1.33 2.086±0.48 1.748±0.92 2.506±2.30 16.024±3.66 0.388±0.00 7.656±2.59 3.603±0.98 1.241±0.48
ENSMUST00000176864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177457 N/A N/A N/A 18.594±0.00 N/A N/A 1.068±0.00 N/A 1.443±0.00 N/A 0.308±0.00 N/A N/A N/A
ENSMUSG00000026662 ENSMUST00000027973 2.374±0.83 4.387±1.28 2.868±0.03 4.929±3.05 2.206±0.49 1.482±0.49 0.867±0.11 2.928±0.46 2.336±0.63 2.127±0.40 1.568±0.36 2.800±0.89 1.979±0.82 0.628±0.12
ENSMUST00000115019 12.277±2.80 10.762±1.74 7.361±0.00 15.607±10.94 9.688±0.76 6.493±0.50 3.885±0.49 10.087±1.18 6.962±2.93 11.097±0.59 4.137±0.23 14.016±4.89 6.741±4.50 3.146±0.07
ENSMUST00000140045 N/A N/A N/A 5.694±0.00 N/A N/A N/A N/A N/A N/A N/A 26.810±0.00 12.291±6.52 3.042±0.00
ENSMUST00000144565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039449 ENSMUST00000035721 1.466±0.31 3.936±0.52 7.337±2.88 6.505±0.46 1.688±0.55 1.186±0.00 3.361±2.36 1.844±0.38 6.533±2.39 3.403±1.73 1.856±0.42 4.461±3.01 11.245±2.51 1.323±0.57
ENSMUST00000140818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.755±0.00 31.719±0.00 27.683±0.00
ENSMUST00000144650 N/A N/A N/A 27.906±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152362 N/A N/A N/A 8.831±0.00 N/A N/A N/A N/A 4.429±0.00 N/A N/A 11.943±0.00 17.676±12.25 4.007±3.44
ENSMUST00000153881 N/A N/A N/A 3.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048186 ENSMUST00000056914 N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A 0.130±0.00 N/A 0.139±0.00 0.656±0.02 0.965±0.01 0.105±0.00
ENSMUST00000115022 N/A 3.094±0.07 N/A N/A 0.615±0.21 0.961±0.50 N/A N/A N/A 3.451±0.00 N/A 0.831±0.47 0.255±0.00 0.061±0.01
ENSMUST00000138322 0.664±0.00 3.674±0.26 0.350±0.16 0.567±0.43 0.477±0.06 0.913±0.00 0.425±0.00 0.949±0.39 0.359±0.11 5.255±2.03 0.233±0.13 1.354±0.45 2.988±2.04 0.065±0.04
ENSMUST00000184139 N/A N/A N/A 0.442±0.19 0.204±0.07 0.208±0.00 0.613±0.00 N/A 0.919±0.00 1.614±0.17 0.226±0.02 0.307±0.00 2.524±0.11 0.088±0.06
ENSMUSG00000083378 ENSMUST00000118297 N/A N/A 0.071±0.00 0.194±0.06 N/A N/A 0.169±0.00 N/A 0.170±0.12 N/A N/A 0.100±0.00 0.100±0.08 0.234±0.06
ENSMUSG00000083407 ENSMUST00000117910 N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.780±0.29 0.323±0.17 0.391±0.32
ENSMUSG00000086874 ENSMUST00000139479 0.244±0.10 N/A N/A 0.115±0.00 N/A 0.226±0.00 0.095±0.00 N/A N/A 0.172±0.00 N/A N/A 0.047±0.00 1.053±0.54

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