C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired related homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039476 Prrx2 10090 + 2:30834972-30881251 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041659 Prrx2-002 30845059-30881251 protein_coding
  ENSMUST00000113592 Prrx2-001 30834972-30881222 protein_coding
  ENSMUST00000137924 Prrx2-004 30879319-30881120 retained_intron
  ENSMUST00000150299 Prrx2-003 30845444-30878657 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041659ENSMUST00000113592ENSMUST00000137924ENSMUST00000150299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041659 6.901±3.39 0.760±0.46 5.585±1.21 2.164±0.96 6.445±3.17 2.970±0.52 0.577±0.09 1.205±0.30 0.122±0.11 1.175±0.19 0.247±0.08 11.807±6.08 1.158±0.38 0.333±0.13
ENSMUST00000113592 1.206±0.00 0.465±0.20 N/A 0.778±0.51 3.804±2.08 0.585±0.00 0.440±0.20 0.444±0.13 0.098±0.07 0.447±0.04 0.434±0.17 0.844±0.41 0.262±0.08 0.101±0.05
ENSMUST00000137924 3.387±1.63 0.505±0.13 3.104±0.74 1.137±0.24 4.159±1.29 1.143±0.28 N/A 0.943±0.47 0.194±0.20 0.672±0.12 0.395±0.13 7.251±2.34 0.351±0.23 0.167±0.02
ENSMUST00000150299 N/A 0.611±0.18 N/A N/A 6.894±0.00 N/A N/A 1.230±0.00 0.110±0.09 0.892±0.09 N/A N/A N/A 0.305±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UD CIL_0005UD_0002 CGP 2:30823097-30881251
CIL_0005UC CIL_0005UC_0002 CGP 2:30834972-30929863

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IGI middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IGI embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IGI cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000167157 PRRX2 paired related homeobox 2 protein_coding Homo_sapiens

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