C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041659 Prrx2-002 ENSMUSG00000039476 10090 + 2:30845059-30881251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041659 6.901±3.39 0.760±0.46 5.585±1.21 2.164±0.96 6.445±3.17 2.970±0.52 0.577±0.09 1.205±0.30 0.122±0.11 1.175±0.19 0.247±0.08 11.807±6.08 1.158±0.38 0.333±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UD CIL_0005UD_0002 CGP 2:30823097-30881251
CIL_0005UC CIL_0005UC_0002 CGP 2:30834972-30929863

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IGI middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IGI embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IGI cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131637 prrx1b-002 protein_coding Danio_rerio 7e-31 139
ENSDART00000061588 prrx1b-001 protein_coding Danio_rerio 7e-31 139
ENST00000372469 PRRX2-001 protein_coding Homo_sapiens 0 712

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