C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein U
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039630 Hnrnpu 10090 - 1:178324343-178337797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037748 Hnrnpu-001 178324343-178337797 protein_coding
  ENSMUST00000134291 Hnrnpu-002 178335642-178336405 retained_intron
  ENSMUST00000146362 Hnrnpu-004 178332103-178334546 processed_transcript
  ENSMUST00000150825 Hnrnpu-003 178331866-178332926 retained_intron
  ENSMUST00000162916 Hnrnpu-006 178324832-178330320 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037748 7.749±3.27 36.751±17.21 14.441±0.13 25.778±4.94 8.653±6.10 12.073±4.42 3.738±1.10 6.407±1.95 16.338±9.85 12.835±0.84 3.548±1.34 38.190±29.24 18.795±4.95 12.258±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L4 CIL_0000L4_0003 CGP 1:178324343-178483247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004735 hnrnpub heterogeneous nuclear ribonucleoprotein Ub protein_coding Danio_rerio
ENSDARG00000015206 hnrnpua heterogeneous nuclear ribonucleoprotein Ua protein_coding Danio_rerio
ENSG00000153187 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) protein_coding Homo_sapiens

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