C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000L4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015206-ENSDARG00000074323 CGP 7955 17:11333984-11368482
GeneTranscriptPositionBiotype
ENSDARG00000015206 (hnrnpua)
heterogeneous nuclear ribonucleoprotein Ua 		ENSDART00000020598 (hnrnpua-001) 11333984-11358878 protein_coding
CIL_0000L4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153187-ENSG00000203666 CGP 9606 1:244851166-245127164
GeneTranscriptPositionBiotype
ENSG00000153187 (HNRNPU)
heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 		ENST00000283179 (HNRNPU-002) 244853388-244864471 protein_coding
ENST00000366525 (HNRNPU-004) 244854133-244861091 retained_intron
ENST00000440865 (HNRNPU-003) 244858111-244863094 protein_coding
ENST00000444376 (HNRNPU-001) 244851166-244864542 protein_coding
ENST00000465881 (HNRNPU-005) 244858153-244859347 retained_intron
ENST00000468690 (HNRNPU-006) 244856414-244857076 retained_intron
ENST00000476241 (HNRNPU-008) 244861778-244864491 retained_intron
ENST00000483966 (HNRNPU-007) 244856283-244857717 retained_intron
ENSG00000201758 (RN7SKP55)
RNA, 7SK small nuclear pseudogene 55 		ENST00000364888 (RN7SKP55-201) 244943910-244944216 misc_RNA
ENSG00000203666 (EFCAB2)
EF-hand calcium binding domain 2 		ENST00000366521 (EFCAB2-007) 244970356-245087556 protein_coding
ENST00000366522 (EFCAB2-001) 244969982-245127164 protein_coding
ENST00000366523 (EFCAB2-003) 244969869-245087839 protein_coding
ENST00000391837 (EFCAB2-014) 244969705-245091789 processed_transcript
ENST00000425550 (EFCAB2-008) 245017242-245086961 protein_coding
ENST00000427529 (EFCAB2-010) 245083456-245086961 protein_coding
ENST00000447569 (EFCAB2-012) 244970327-245121981 protein_coding
ENST00000473686 (EFCAB2-005) 244970351-245087794 processed_transcript
ENST00000479260 (EFCAB2-009) 245002153-245030831 processed_transcript
ENST00000479923 (EFCAB2-011) 245107179-245122521 processed_transcript
ENST00000487845 (EFCAB2-002) 244970390-245122991 processed_transcript
ENST00000495271 (EFCAB2-006) 244970423-245087581 processed_transcript
ENST00000497591 (EFCAB2-004) 244970286-245091806 processed_transcript
ENST00000518607 (EFCAB2-013) 244969739-244970496 retained_intron
ENST00000549220 (EFCAB2-016) 244970405-245083831 processed_transcript
ENST00000551317 (EFCAB2-015) 245017242-245083860 protein_coding
ENSG00000272195 (RP11-156E8.1)
 ENST00000607453 (RP11-156E8.1-001) 244969350-244971088 antisense
ENSG00000273175 (RP11-11N7.4)
 ENST00000610145 (RP11-11N7.4-001) 244864738-244865272 lincRNA
CIL_0000L4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039630-ENSMUSG00000026495 CGP 10090 1:178324343-178483247
GeneTranscriptPositionBiotype
ENSMUSG00000026495 (Efcab2)
EF-hand calcium binding domain 2 		ENSMUST00000027775 (Efcab2-201) 178405881-178483247 protein_coding
ENSMUSG00000039630 (Hnrnpu)
heterogeneous nuclear ribonucleoprotein U 		ENSMUST00000037748 (Hnrnpu-001) 178324343-178337797 protein_coding
ENSMUST00000134291 (Hnrnpu-002) 178335642-178336405 retained_intron
ENSMUST00000146362 (Hnrnpu-004) 178332103-178334546 processed_transcript
ENSMUST00000150825 (Hnrnpu-003) 178331866-178332926 retained_intron
ENSMUST00000162916 (Hnrnpu-006) 178324832-178330320 retained_intron
ENSMUSG00000100725 (HNRNPU)
predicted gene 28062 		ENSMUST00000161769 (HNRNPU-001) 178323074-178337728 nonsense_mediated_decay
ENSMUST00000188044 (HNRNPU-002) 178323134-178330621 nonsense_mediated_decay
ENSMUST00000189450 (HNRNPU-003) 178323620-178329407 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000L4_0001ENSDARG00000015206ENSDART00000020598CIL_0000L4_0002ENSG00000153187ENST00000283179ENST00000366525ENST00000440865ENST00000444376ENST00000465881ENST00000468690ENST00000476241ENST00000483966ENSG00000201758ENST00000364888ENSG00000203666ENST00000366521ENST00000366522ENST00000366523ENST00000391837ENST00000425550ENST00000427529ENST00000447569ENST00000473686ENST00000479260ENST00000479923ENST00000487845ENST00000495271ENST00000497591ENST00000518607ENST00000549220ENST00000551317ENSG00000272195ENST00000607453ENSG00000273175ENST00000610145CIL_0000L4_0003ENSMUSG00000026495ENSMUST00000027775ENSMUSG00000039630ENSMUST00000037748ENSMUST00000134291ENSMUST00000146362ENSMUST00000150825ENSMUST00000162916ENSMUSG00000100725ENSMUST00000161769ENSMUST00000188044ENSMUST00000189450
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000L4_0001ENSDARG00000015206ENSDART00000020598CIL_0000L4_0002ENSG00000153187ENST00000283179ENST00000366525ENST00000444376ENSG00000201758ENST00000364888ENSG00000203666ENST00000366521ENST00000366522ENST00000366523ENST00000447569ENST00000473686ENST00000479923ENST00000487845ENST00000497591ENSG00000272195ENST00000607453ENSG00000273175ENST00000610145CIL_0000L4_0003ENSMUSG00000026495ENSMUST00000027775ENSMUSG00000039630ENSMUST00000037748ENSMUSG00000100725ENSMUST00000161769
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015206 ENSDART00000020598 N/A N/A N/A 9.435±7.25 N/A N/A 6.221±0.70 4.794±0.77 1.485±0.00 N/A 4.464±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153187 ENST00000283179 88.209±0.00 69.740±0.00 5.872±0.00 18.002±10.97 70.285±0.00 45.936±36.42 22.653±20.33 42.749±35.09 25.615±6.53 45.229±0.00 35.131±30.58 130.334±56.56 120.640±62.99 183.730±66.40
ENST00000366525 N/A N/A 4.298±0.00 4.625±0.00 18.115±0.00 14.458±0.00 3.209±0.00 5.479±0.00 N/A 16.481±0.00 N/A 17.187±0.00 N/A N/A
ENST00000440865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444376 8.202±0.00 8.953±0.00 N/A 5.393±0.00 N/A 7.714±0.00 1.367±0.00 5.495±0.00 N/A 6.025±0.00 4.982±2.86 13.023±2.27 N/A N/A
ENST00000465881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201758 ENST00000364888 N/A N/A N/A 0.145±0.00 0.069±0.00 1.465±0.00 0.063±0.00 N/A N/A N/A N/A 0.546±0.00 0.286±0.00 N/A
ENSG00000203666 ENST00000366521 N/A N/A N/A 1.804±0.00 N/A N/A N/A N/A N/A N/A N/A 1.194±0.00 1.399±0.06 12.147±0.00
ENST00000366522 0.262±0.00 0.456±0.00 0.363±0.00 N/A 0.126±0.00 0.255±0.00 0.243±0.00 N/A 0.163±0.00 N/A N/A 0.551±0.33 0.513±0.00 N/A
ENST00000366523 0.895±0.00 1.665±0.00 N/A 2.313±0.00 0.714±0.00 0.697±0.01 1.811±0.00 1.616±0.00 0.496±0.00 1.939±0.00 N/A 1.562±0.73 0.950±0.00 6.163±3.03
ENST00000391837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447569 N/A N/A 2.881±0.00 2.318±0.00 1.085±0.00 1.926±0.00 2.801±0.00 1.130±0.00 2.081±0.00 N/A N/A 9.222±7.65 2.903±0.00 8.285±0.63
ENST00000473686 0.988±0.00 N/A N/A 1.369±0.00 N/A 0.752±0.00 1.704±0.64 N/A 1.317±0.00 N/A 1.911±1.12 N/A N/A 3.134±0.00
ENST00000479260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479923 N/A N/A N/A N/A N/A N/A N/A 0.668±0.00 N/A 2.038±0.00 N/A N/A N/A N/A
ENST00000487845 2.113±0.00 1.301±0.00 N/A 1.802±0.47 4.578±0.00 1.873±0.00 2.004±0.93 2.271±0.00 2.046±0.00 3.453±0.00 2.084±0.00 3.406±2.04 2.674±1.23 N/A
ENST00000495271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497591 N/A N/A N/A N/A N/A 1.179±0.00 N/A 0.433±0.00 N/A 0.983±0.00 N/A N/A N/A N/A
ENST00000518607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272195 ENST00000607453 N/A 1.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.732±0.00
ENSG00000273175 ENST00000610145 0.091±0.00 0.322±0.00 N/A 0.325±0.06 0.442±0.00 N/A 0.135±0.00 N/A N/A 0.184±0.06 0.297±0.10 0.061±0.02 N/A 1.795±0.84
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026495 ENSMUST00000027775 0.332±0.12 0.281±0.08 0.379±0.00 0.579±0.18 0.365±0.16 0.166±0.09 3.970±0.00 N/A 0.404±0.19 0.724±0.21 1.816±0.48 0.311±0.16 0.352±0.17 9.057±1.86
ENSMUSG00000039630 ENSMUST00000037748 7.749±3.27 36.751±17.21 14.441±0.13 25.778±4.94 8.653±6.10 12.073±4.42 3.738±1.10 6.407±1.95 16.338±9.85 12.835±0.84 3.548±1.34 38.190±29.24 18.795±4.95 12.258±0.37
ENSMUST00000134291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100725 ENSMUST00000161769 23.304±11.61 N/A 49.712±2.08 84.744±32.32 13.544±3.31 18.972±5.89 12.078±1.11 19.253±2.18 70.640±59.03 31.174±2.43 18.969±2.67 63.586±58.81 141.345±86.70 131.556±87.39
ENSMUST00000188044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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