C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037748 Hnrnpu-001 ENSMUSG00000039630 10090 - 1:178324343-178337797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037748 7.749±3.27 36.751±17.21 14.441±0.13 25.778±4.94 8.653±6.10 12.073±4.42 3.738±1.10 6.407±1.95 16.338±9.85 12.835±0.84 3.548±1.34 38.190±29.24 18.795±4.95 12.258±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L4 CIL_0000L4_0003 CGP 1:178324343-178483247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283179 HNRNPU-002 protein_coding Homo_sapiens 0 4204
ENST00000366525 HNRNPU-004 retained_intron Homo_sapiens 0 2887
ENST00000440865 HNRNPU-003 protein_coding Homo_sapiens 0 1014
ENST00000444376 HNRNPU-001 protein_coding Homo_sapiens 0 5640
ENST00000465881 HNRNPU-005 retained_intron Homo_sapiens 0 342
ENST00000468690 HNRNPU-006 retained_intron Homo_sapiens 0 477
ENST00000475997 RP11-11N7.5-001 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000476241 HNRNPU-008 retained_intron Homo_sapiens 0 1062
ENST00000483966 HNRNPU-007 retained_intron Homo_sapiens 0 652
ENST00000489705 RP11-11N7.5-002 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000554987 HNRNPUP1-001 processed_pseudogene Homo_sapiens 0 455

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