C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153187 HNRNPU 9606 - 1:244851166-244864542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283179 HNRNPU-002 244853388-244864471 protein_coding
  ENST00000366525 HNRNPU-004 244854133-244861091 retained_intron
  ENST00000440865 HNRNPU-003 244858111-244863094 protein_coding
  ENST00000444376 HNRNPU-001 244851166-244864542 protein_coding
  ENST00000465881 HNRNPU-005 244858153-244859347 retained_intron
  ENST00000468690 HNRNPU-006 244856414-244857076 retained_intron
  ENST00000476241 HNRNPU-008 244861778-244864491 retained_intron
  ENST00000483966 HNRNPU-007 244856283-244857717 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283179ENST00000366525ENST00000444376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283179 88.209±0.00 69.740±0.00 5.872±0.00 18.002±10.97 70.285±0.00 45.936±36.42 22.653±20.33 42.749±35.09 25.615±6.53 45.229±0.00 35.131±30.58 130.334±56.56 120.640±62.99 183.730±66.40
ENST00000366525 N/A N/A 4.298±0.00 4.625±0.00 18.115±0.00 14.458±0.00 3.209±0.00 5.479±0.00 N/A 16.481±0.00 N/A 17.187±0.00 N/A N/A
ENST00000444376 8.202±0.00 8.953±0.00 N/A 5.393±0.00 N/A 7.714±0.00 1.367±0.00 5.495±0.00 N/A 6.025±0.00 4.982±2.86 13.023±2.27 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L4 CIL_0000L4_0002 CGP 1:244851166-245127164

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016301 IEA kinase activity
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044822 IDA poly(A) RNA binding
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004735 hnrnpub heterogeneous nuclear ribonucleoprotein Ub protein_coding Danio_rerio
ENSDARG00000015206 hnrnpua heterogeneous nuclear ribonucleoprotein Ua protein_coding Danio_rerio
ENSMUSG00000039630 Hnrnpu heterogeneous nuclear ribonucleoprotein U protein_coding Mus_musculus
ENSMUSG00000100725 HNRNPU predicted gene 28062 protein_coding Mus_musculus

Loading