C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splA/ryanodine receptor domain and SOCS box containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039911 Spsb1 10090 - 4:149896283-149955043 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038562 Spsb1-001 149896283-149955043 protein_coding
  ENSMUST00000105684 Spsb1-009 149898214-149907289 protein_coding
  ENSMUST00000105685 Spsb1-002 149897967-149909816 protein_coding
  ENSMUST00000125135 Spsb1-005 149907000-149942618 protein_coding
  ENSMUST00000135896 Spsb1-008 149909565-149955031 processed_transcript
  ENSMUST00000149360 Spsb1-006 149906995-149931556 protein_coding
  ENSMUST00000149743 Spsb1-004 149907049-149946098 protein_coding
  ENSMUST00000156451 Spsb1-007 149907142-149955043 processed_transcript
  ENSMUST00000156897 Spsb1-003 149906507-149953804 protein_coding
  ENSMUST00000167342 Spsb1-010 149906991-149922471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038562ENSMUST00000105684ENSMUST00000105685ENSMUST00000149360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038562 10.011±0.93 14.690±0.91 7.363±1.36 1.726±0.53 17.375±3.47 7.688±0.84 6.402±1.43 1.971±1.01 0.294±0.16 6.305±2.27 1.492±0.19 101.858±31.05 5.740±3.67 3.059±1.15
ENSMUST00000105684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.020±0.00
ENSMUST00000105685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.666±11.04
ENSMUST00000149360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.826±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VW CIL_0008VW_0002 VISTA 4:149592945-150194331

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056515 spsb1 splA/ryanodine receptor domain and SOCS box containing 1 protein_coding Danio_rerio
ENSG00000171621 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein_coding Homo_sapiens

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