C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splA/ryanodine receptor domain and SOCS box containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038562 Spsb1-001 ENSMUSG00000039911 10090 - 4:149896283-149955043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038562 10.011±0.93 14.690±0.91 7.363±1.36 1.726±0.53 17.375±3.47 7.688±0.84 6.402±1.43 1.971±1.01 0.294±0.16 6.305±2.27 1.492±0.19 101.858±31.05 5.740±3.67 3.059±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VW CIL_0008VW_0002 VISTA 4:149592945-150194331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295851 ABI2-001 protein_coding Homo_sapiens 0.001 53
ENST00000328089 SPSB1-001 protein_coding Homo_sapiens 0 1186
ENST00000334731 C9orf85-004 protein_coding Homo_sapiens 0.00008 53
ENST00000356178 ZNF527-002 nonsense_mediated_decay Homo_sapiens 0.0003 53
ENST00000357898 SPSB1-003 protein_coding Homo_sapiens 0 1094
ENST00000377399 SPSB1-002 protein_coding Homo_sapiens 0 1072
ENST00000379959 IL2RA-001 protein_coding Homo_sapiens 0.0002 53
ENST00000426739 ZNF234-001 protein_coding Homo_sapiens 0.0003 53
ENST00000428463 ZNF630-004 nonsense_mediated_decay Homo_sapiens 0.00008 53
ENST00000436120 ZNF527-004 protein_coding Homo_sapiens 0.0002 53
ENST00000438118 VDAC1P8-014 retained_intron Homo_sapiens 0.00006 53
ENST00000450402 SPSB1-004 protein_coding Homo_sapiens 0 811
ENST00000451668 FUCA2-003 protein_coding Homo_sapiens 0.00005 53
ENST00000461688 CREB3L4-011 processed_transcript Homo_sapiens 0.00006 53
ENST00000467190 MIA3-008 processed_transcript Homo_sapiens 0.00003 53
ENST00000474962 CLIP2-007 retained_intron Homo_sapiens 0.00004 53
ENST00000479413 C9orf85-001 nonsense_mediated_decay Homo_sapiens 0.00006 53
ENST00000481865 TNK2-009 retained_intron Homo_sapiens 0.0004 53
ENST00000488118 XPNPEP1-001 retained_intron Homo_sapiens 0.0003 53
ENST00000491998 DFFB-005 nonsense_mediated_decay Homo_sapiens 0.0002 53
ENST00000497735 MAP4-008 retained_intron Homo_sapiens 0.0001 53
ENST00000589563 VDAC1P8-003 processed_transcript Homo_sapiens 0.00005 53
ENST00000602150 SCN1B-004 retained_intron Homo_sapiens 0.0002 53
ENST00000610068 VDAC1P8-009 processed_transcript Homo_sapiens 0.00008 53
ENST00000622321 VDAC1P8-010 retained_intron Homo_sapiens 0.00006 53

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