C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calsyntenin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039953 Clstn1 10090 + 4:149586468-149648899 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039144 Clstn1-002 149586638-149647899 protein_coding
  ENSMUST00000105691 Clstn1-001 149586468-149648899 protein_coding
  ENSMUST00000137232 Clstn1-003 149587248-149627325 processed_transcript
  ENSMUST00000151895 Clstn1-004 149627130-149632173 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039144ENSMUST00000105691ENSMUST00000137232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039144 4.715±0.43 11.888±2.67 N/A 477.331±0.00 5.197±2.72 N/A 2.480±0.20 N/A 0.207±0.08 16.511±8.73 1.203±0.00 10.565±10.93 16.951±5.26 1.963±1.69
ENSMUST00000105691 13.745±7.66 13.899±4.64 19.895±6.23 79.384±68.80 8.978±3.94 36.537±19.44 4.841±2.19 11.977±1.25 0.363±0.19 25.510±11.46 3.070±0.74 19.399±4.12 6.217±2.67 1.904±0.28
ENSMUST00000137232 N/A 70.879±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006874 TAS cellular calcium ion homeostasis
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 NAS synaptic transmission
GO:0016021 IDA integral component of membrane
GO:0019894 IEA kinesin binding
GO:0030054 IEA cell junction
GO:0042988 IEA X11-like protein binding
GO:0042995 IEA cell projection
GO:0045211 IDA postsynaptic membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031720 clstn1 calsyntenin 1 protein_coding Danio_rerio
ENSG00000171603 CLSTN1 calsyntenin 1 protein_coding Homo_sapiens

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