C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calsyntenin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171603 CLSTN1 9606 - 1:9729026-9824526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361311 CLSTN1-002 9729028-9823984 protein_coding
  ENST00000377298 CLSTN1-001 9729026-9824526 protein_coding
  ENST00000435891 CLSTN1-003 9729028-9751581 protein_coding
  ENST00000464286 CLSTN1-005 9749488-9750167 processed_transcript
  ENST00000477264 CLSTN1-006 9729028-9733486 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361311ENST00000377298ENST00000435891ENST00000477264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361311 18.265±0.00 13.263±0.00 7.322±0.00 60.849±24.26 8.848±1.71 12.665±6.60 7.473±6.38 25.028±0.00 3.196±1.96 11.872±5.66 9.655±7.51 29.956±15.11 38.027±14.47 12.832±4.64
ENST00000377298 N/A N/A N/A 6.890±0.00 2.788±0.00 N/A 3.336±1.16 N/A 4.912±0.00 N/A 0.549±0.00 17.740±0.00 21.041±0.00 N/A
ENST00000435891 19.744±0.00 19.616±0.00 3.569±0.00 82.029±0.00 20.053±0.00 18.584±0.00 6.591±0.00 14.940±14.10 2.853±0.00 18.396±0.00 7.902±0.00 34.535±9.01 36.321±0.82 24.668±0.00
ENST00000477264 N/A 16.186±0.00 N/A 48.809±0.00 10.316±0.00 20.514±0.00 N/A N/A N/A N/A N/A 26.084±0.00 N/A 22.795±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019894 IPI kinesin binding
GO:0030054 IEA cell junction
GO:0042988 IPI X11-like protein binding
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031720 clstn1 calsyntenin 1 protein_coding Danio_rerio
ENSMUSG00000039953 Clstn1 calsyntenin 1 protein_coding Mus_musculus

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