C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsyntenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039144 Clstn1-002 ENSMUSG00000039953 10090 + 4:149586638-149647899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000039144
Transcript ID Adipose Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039144 4.715±0.43 11.888±2.67 477.331±0.00 5.197±2.72 2.480±0.20 0.207±0.08 16.511±8.73 1.203±0.00 10.565±10.93 16.951±5.26 1.963±1.69

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006874 TAS cellular calcium ion homeostasis
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 NAS synaptic transmission
GO:0016021 IDA integral component of membrane
GO:0019894 IEA kinesin binding
GO:0030054 IEA cell junction
GO:0042988 IEA X11-like protein binding
GO:0042995 IEA cell projection
GO:0045211 IDA postsynaptic membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361311 CLSTN1-002 protein_coding Homo_sapiens 0 2802
ENST00000377298 CLSTN1-001 protein_coding Homo_sapiens 0 3140
ENST00000435891 CLSTN1-003 protein_coding Homo_sapiens 0 1450
ENST00000464286 CLSTN1-005 processed_transcript Homo_sapiens 0 324
ENST00000477264 CLSTN1-006 processed_transcript Homo_sapiens 0 503

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