C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsyntenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105691 Clstn1-001 ENSMUSG00000039953 10090 + 4:149586468-149648899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105691 13.745±7.66 13.899±4.64 19.895±6.23 79.384±68.80 8.978±3.94 36.537±19.44 4.841±2.19 11.977±1.25 0.363±0.19 25.510±11.46 3.070±0.74 19.399±4.12 6.217±2.67 1.904±0.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006874 TAS cellular calcium ion homeostasis
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 NAS synaptic transmission
GO:0016021 IDA integral component of membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0045211 IDA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361311 CLSTN1-002 protein_coding Homo_sapiens 0 3142
ENST00000377298 CLSTN1-001 protein_coding Homo_sapiens 0 2859
ENST00000435891 CLSTN1-003 protein_coding Homo_sapiens 0 1507
ENST00000464286 CLSTN1-005 processed_transcript Homo_sapiens 0 324
ENST00000477264 CLSTN1-006 processed_transcript Homo_sapiens 0 503

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