C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YTH domain family 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040025 Ythdf2 10090 - 4:132184912-132212303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085181 Ythdf2-003 132186290-132212091 protein_coding
  ENSMUST00000102570 Ythdf2-002 132186750-132212105 retained_intron
  ENSMUST00000152796 Ythdf2-001 132184912-132212303 protein_coding
  ENSMUST00000165072 Ythdf2-004 132186688-132210809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085181ENSMUST00000102570ENSMUST00000152796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085181 N/A 16.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.308±0.42 N/A 3.653±0.55 0.312±0.00
ENSMUST00000102570 6.280±0.69 2.242±0.37 4.117±1.61 10.968±1.28 6.938±6.07 2.238±0.53 3.788±0.91 3.730±1.35 2.476±1.82 3.253±1.03 2.639±0.78 5.667±5.02 12.823±5.03 5.104±0.85
ENSMUST00000152796 4.471±2.33 12.121±2.30 3.520±0.46 8.371±0.10 5.550±2.59 7.666±1.41 1.290±0.31 3.551±1.15 4.595±1.22 5.592±0.77 1.075±0.47 10.085±3.44 4.412±1.23 2.211±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:1990247 ISS N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014498 yth2 YTH domain family 2 protein_coding Danio_rerio
ENSG00000198492 YTHDF2 YTH domain family, member 2 protein_coding Homo_sapiens

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