C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 9430038I01 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040139 9430038I01Rik 10090 - 7:137375574-137410762 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068996 9430038I01Rik-001 137375574-137410762 protein_coding
  ENSMUST00000117404 9430038I01Rik-004 137376137-137410735 protein_coding
  ENSMUST00000120340 9430038I01Rik-003 137383046-137410732 protein_coding
  ENSMUST00000135335 9430038I01Rik-002 137383014-137410756 retained_intron
  ENSMUST00000145881 9430038I01Rik-005 137375574-137410756 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068996ENSMUST00000117404ENSMUST00000120340ENSMUST00000135335ENSMUST00000145881
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068996 2.713±0.33 3.001±0.37 2.756±0.49 1.481±0.71 3.440±1.15 6.738±0.52 2.151±0.45 2.901±0.47 4.271±0.65 5.174±0.08 1.705±0.44 7.140±3.81 4.028±0.97 0.736±0.30
ENSMUST00000117404 1.472±0.07 1.738±0.51 N/A 0.898±0.00 1.345±0.28 1.606±0.13 N/A 1.024±0.17 2.386±0.64 1.201±0.09 1.062±0.25 3.658±0.95 3.674±1.47 0.302±0.00
ENSMUST00000120340 0.481±0.10 0.649±0.00 0.172±0.00 0.183±0.10 0.394±0.08 N/A 0.128±0.00 0.136±0.00 0.224±0.00 0.432±0.11 0.061±0.00 0.517±0.26 0.124±0.01 0.089±0.06
ENSMUST00000135335 N/A 0.593±0.13 N/A N/A 0.390±0.01 N/A N/A 0.152±0.00 N/A N/A N/A 0.559±0.06 N/A 0.187±0.00
ENSMUST00000145881 N/A N/A N/A N/A N/A N/A N/A N/A 1.076±0.00 N/A 0.333±0.00 1.216±0.27 N/A 0.402±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0002 UCNEbase 7:135757037-137452523
CIL_0008TP CIL_0008TP_0002 VISTA 7:136791736-137393087
CIL_0007UL CIL_0007UL_0002 VISTA 7:136950056-137551790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

No Homologs available.

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