| Source ID |
Type |
Tax ID |
Position |
| EBF3 |
UCNEbase |
7955 |
Zv9_NA545:29084-194005  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007OP_0008 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000108001' => 'early B-cell factor 3',
'ENSG00000108010' => 'glutaredoxin 3',
'ENSG00000170430' => 'O-6-methylguanine-DNA methyltransferase',
'ENSG00000224190' => null,
'ENSG00000225424' => null,
'ENSG00000227374' => null,
'ENSG00000232985' => null,
'ENSG00000233122' => 'CTAGE family, member 7, pseudogene',
'ENSG00000233319' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 32',
'ENSG00000234640' => null,
'ENSG00000237224' => null,
'ENSG00000237489' => 'long intergenic non-protein coding RNA 959',
'ENSG00000266061' => null,
'ENSG00000266676' => 'microRNA 4297',
'ENSG00000275005' => null,
'ENSG00000275089' => null,
'ENSG00000275327' => null,
'ENSG00000277218' => null,
'ENSMUSG00000010476' => 'early B cell factor 3',
'ENSMUSG00000031068' => 'glutaredoxin 3',
'ENSMUSG00000040139' => 'RIKEN cDNA 9430038I01 gene',
'ENSMUSG00000054612' => 'O-6-methylguanine-DNA methyltransferase',
'ENSMUSG00000087869' => 'predicted gene, 24444',
'ENSMUSG00000098031' => 'predicted gene 9341',
'ENSDARG00000016300' => 'early B-cell factor 3'
),
'gene_name_arr' => array(
'ENSG00000108001' => 'EBF3',
'ENSG00000108010' => 'GLRX3',
'ENSG00000170430' => 'MGMT',
'ENSG00000224190' => 'RP11-442O18.2',
'ENSG00000225424' => 'RP11-168C9.1',
'ENSG00000227374' => 'RP11-109A6.3',
'ENSG00000232985' => 'RP11-442O18.1',
'ENSG00000233122' => 'CTAGE7P',
'ENSG00000233319' => 'PPIAP32',
'ENSG00000234640' => 'RP11-264E18.1',
'ENSG00000237224' => 'RP11-109A6.2',
'ENSG00000237489' => 'LINC00959',
'ENSG00000266061' => 'AL355531.1',
'ENSG00000266676' => 'MIR4297',
'ENSG00000275005' => 'RP11-234G16.5',
'ENSG00000275089' => 'AL355537.1',
'ENSG00000275327' => 'RP11-234G16.4',
'ENSG00000277218' => 'RP11-500G10.5',
'ENSMUSG00000010476' => 'Ebf3',
'ENSMUSG00000031068' => 'Glrx3',
'ENSMUSG00000040139' => '9430038I01Rik',
'ENSMUSG00000054612' => 'Mgmt',
'ENSMUSG00000087869' => 'Gm24444',
'ENSMUSG00000098031' => 'Gm9341',
'ENSDARG00000016300' => 'ebf3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 49 => 'Brain',
(int) 68 => 'Breast',
(int) 89 => 'Colon',
(int) 109 => 'Heart',
(int) 128 => 'Kidney',
(int) 148 => 'Liver',
(int) 168 => 'Lung',
(int) 189 => 'Muscle',
(int) 205 => 'Ovary',
(int) 231 => 'Placenta',
(int) 245 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000355311' => array(
'start' => '129836800',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-001'
),
'ENST00000368648' => array(
'start' => '129835283',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-002'
),
'ENST00000440978' => array(
'start' => '129837700',
'end' => '129842171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-004'
),
'ENST00000331244' => array(
'start' => '130136399',
'end' => '130179664',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-001'
),
'ENST00000368644' => array(
'start' => '130136399',
'end' => '130182881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-002'
),
'ENST00000481034' => array(
'start' => '130136399',
'end' => '130184521',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'GLRX3-003'
),
'ENST00000486974' => array(
'start' => '130159746',
'end' => '130160873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-005'
),
'ENST00000496195' => array(
'start' => '130179374',
'end' => '130180382',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-004'
),
'ENST00000619341' => array(
'start' => '130180185',
'end' => '130183643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-006'
),
'ENST00000306010' => array(
'start' => '129467184',
'end' => '129768007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MGMT-001'
),
'ENST00000462672' => array(
'start' => '129701627',
'end' => '129717867',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-004'
),
'ENST00000482547' => array(
'start' => '129467262',
'end' => '129537164',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MGMT-002'
),
'ENST00000482653' => array(
'start' => '129467229',
'end' => '129564162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-003'
),
'ENST00000446589' => array(
'start' => '128912879',
'end' => '128916271',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.2-001'
),
'ENST00000414581' => array(
'start' => '129278251',
'end' => '129291722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-168C9.1-001'
),
'ENST00000428273' => array(
'start' => '129768844',
'end' => '129769435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-109A6.3-001'
),
'ENST00000453367' => array(
'start' => '128958772',
'end' => '128960062',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.1-001'
),
'ENST00000435712' => array(
'start' => '130106046',
'end' => '130108481',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTAGE7P-001'
),
'ENST00000449940' => array(
'start' => '130131770',
'end' => '130132241',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP32-001'
),
'ENST00000454492' => array(
'start' => '128316282',
'end' => '128320214',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-264E18.1-001'
),
'ENST00000428178' => array(
'start' => '129700716',
'end' => '129701546',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-001'
),
'ENST00000593883' => array(
'start' => '129700258',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-005'
),
'ENST00000597245' => array(
'start' => '129700469',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-003'
),
'ENST00000597465' => array(
'start' => '129700148',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-004'
),
'ENST00000598332' => array(
'start' => '129700887',
'end' => '129701557',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-002'
),
'ENST00000456581' => array(
'start' => '130066374',
'end' => '130110817',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00959-001'
),
'ENST00000585165' => array(
'start' => '129487869',
'end' => '129487982',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355531.1-201'
),
'ENST00000579857' => array(
'start' => '129843299',
'end' => '129843374',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4297-201'
),
'ENST00000614150' => array(
'start' => '129845328',
'end' => '129845895',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.5-001'
),
'ENST00000613581' => array(
'start' => '129053003',
'end' => '129053052',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355537.1-201'
),
'ENST00000617939' => array(
'start' => '129837505',
'end' => '129837794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.4-001'
),
'ENST00000612008' => array(
'start' => '130104569',
'end' => '130104998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-500G10.5-001'
),
'ENSMUST00000033378' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-201'
),
'ENSMUST00000106118' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-202'
),
'ENSMUST00000168203' => array(
'start' => '137194698',
'end' => '137314414',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-203'
),
'ENSMUST00000169486' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-204'
),
'ENSMUST00000064404' => array(
'start' => '137437648',
'end' => '137468594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Glrx3-201'
),
'ENSMUST00000068996' => array(
'start' => '137375574',
'end' => '137410762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-001'
),
'ENSMUST00000117404' => array(
'start' => '137376137',
'end' => '137410735',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-004'
),
'ENSMUST00000120340' => array(
'start' => '137383046',
'end' => '137410732',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-003'
),
'ENSMUST00000135335' => array(
'start' => '137383014',
'end' => '137410756',
'transcript_biotype' => 'retained_intron',
'transcript_name' => '9430038I01Rik-002'
),
'ENSMUST00000145881' => array(
'start' => '137375574',
'end' => '137410756',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '9430038I01Rik-005'
),
'ENSMUST00000081510' => array(
'start' => '136894611',
'end' => '137128187',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mgmt-201'
),
'ENSMUST00000157244' => array(
'start' => '136509026',
'end' => '136509333',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24444-201'
),
'ENSMUST00000183000' => array(
'start' => '135952798',
'end' => '135953783',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9341-001'
),
'ENSDART00000085381' => array(
'start' => '44139598',
'end' => '44282750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-001'
),
'ENSDART00000138241' => array(
'start' => '44142064',
'end' => '44144930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
'ENSG00000108001' => array(
[maximum depth reached]
),
'ENSG00000108010' => array(
[maximum depth reached]
),
'ENSG00000170430' => array(
[maximum depth reached]
),
'ENSG00000224190' => array(
[maximum depth reached]
),
'ENSG00000225424' => array(
[maximum depth reached]
),
'ENSG00000227374' => array(
[maximum depth reached]
),
'ENSG00000233122' => array(
[maximum depth reached]
),
'ENSG00000233319' => array(
[maximum depth reached]
),
'ENSG00000234640' => array(
[maximum depth reached]
),
'ENSG00000237224' => array(
[maximum depth reached]
),
'ENSG00000237489' => array(
[maximum depth reached]
),
'ENSG00000275005' => array(
[maximum depth reached]
),
'ENSG00000275327' => array(
[maximum depth reached]
),
'ENSG00000277218' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adrenal',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Heart',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Breast',
(int) 67 => 'Lung',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Muscle',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Testis',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Bladder',
(int) 88 => 'Kidney',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Lung',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Brain',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Bladder',
(int) 100 => 'Colon',
(int) 101 => 'Kidney',
(int) 102 => 'Heart',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Liver',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Brain',
(int) 123 => 'Liver',
(int) 124 => 'Testis',
(int) 125 => 'Colon',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Colon',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis'
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000010476' => array(
[maximum depth reached]
),
'ENSMUSG00000031068' => array(
[maximum depth reached]
),
'ENSMUSG00000040139' => array(
[maximum depth reached]
),
'ENSMUSG00000054612' => array(
[maximum depth reached]
),
'ENSMUSG00000098031' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Ovary',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Breast',
(int) 98 => 'Kidney',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Heart',
(int) 112 => 'Kidney',
(int) 113 => 'Liver',
(int) 114 => 'Lung',
(int) 115 => 'Muscle',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis',
(int) 119 => 'Adipose',
(int) 120 => 'Breast',
(int) 121 => 'Colon',
(int) 122 => 'Heart',
(int) 123 => 'Kidney',
(int) 124 => 'Liver',
(int) 125 => 'Ovary'
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
'ENSDARG00000016300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000108001' => 'early B-cell factor 3',
'ENSG00000108010' => 'glutaredoxin 3',
'ENSG00000170430' => 'O-6-methylguanine-DNA methyltransferase',
'ENSG00000224190' => null,
'ENSG00000225424' => null,
'ENSG00000227374' => null,
'ENSG00000232985' => null,
'ENSG00000233122' => 'CTAGE family, member 7, pseudogene',
'ENSG00000233319' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 32',
'ENSG00000234640' => null,
'ENSG00000237224' => null,
'ENSG00000237489' => 'long intergenic non-protein coding RNA 959',
'ENSG00000266061' => null,
'ENSG00000266676' => 'microRNA 4297',
'ENSG00000275005' => null,
'ENSG00000275089' => null,
'ENSG00000275327' => null,
'ENSG00000277218' => null,
'ENSMUSG00000010476' => 'early B cell factor 3',
'ENSMUSG00000031068' => 'glutaredoxin 3',
'ENSMUSG00000040139' => 'RIKEN cDNA 9430038I01 gene',
'ENSMUSG00000054612' => 'O-6-methylguanine-DNA methyltransferase',
'ENSMUSG00000087869' => 'predicted gene, 24444',
'ENSMUSG00000098031' => 'predicted gene 9341',
'ENSDARG00000016300' => 'early B-cell factor 3'
)
$gene_name_arr = array(
'ENSG00000108001' => 'EBF3',
'ENSG00000108010' => 'GLRX3',
'ENSG00000170430' => 'MGMT',
'ENSG00000224190' => 'RP11-442O18.2',
'ENSG00000225424' => 'RP11-168C9.1',
'ENSG00000227374' => 'RP11-109A6.3',
'ENSG00000232985' => 'RP11-442O18.1',
'ENSG00000233122' => 'CTAGE7P',
'ENSG00000233319' => 'PPIAP32',
'ENSG00000234640' => 'RP11-264E18.1',
'ENSG00000237224' => 'RP11-109A6.2',
'ENSG00000237489' => 'LINC00959',
'ENSG00000266061' => 'AL355531.1',
'ENSG00000266676' => 'MIR4297',
'ENSG00000275005' => 'RP11-234G16.5',
'ENSG00000275089' => 'AL355537.1',
'ENSG00000275327' => 'RP11-234G16.4',
'ENSG00000277218' => 'RP11-500G10.5',
'ENSMUSG00000010476' => 'Ebf3',
'ENSMUSG00000031068' => 'Glrx3',
'ENSMUSG00000040139' => '9430038I01Rik',
'ENSMUSG00000054612' => 'Mgmt',
'ENSMUSG00000087869' => 'Gm24444',
'ENSMUSG00000098031' => 'Gm9341',
'ENSDARG00000016300' => 'ebf3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0001',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '128166009',
'seq_end' => '130159815',
'region_length' => '1993806',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0002',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '135757037',
'seq_end' => '137452523',
'region_length' => '1695486',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '44002554',
'seq_end' => '44287411',
'region_length' => '284857',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0004',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '44887375',
'seq_end' => '45182177',
'region_length' => '294802',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0005',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '52950072',
'seq_end' => '52950407',
'region_length' => '335',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA191',
'seq_start' => '38344',
'seq_end' => '38498',
'region_length' => '154',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA227',
'seq_start' => '66154',
'seq_end' => '87086',
'region_length' => '20932',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA545',
'seq_start' => '29084',
'seq_end' => '194005',
'region_length' => '164921',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0009',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA649',
'seq_start' => '27386',
'seq_end' => '32979',
'region_length' => '5593',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 49 => 'Brain',
(int) 68 => 'Breast',
(int) 89 => 'Colon',
(int) 109 => 'Heart',
(int) 128 => 'Kidney',
(int) 148 => 'Liver',
(int) 168 => 'Lung',
(int) 189 => 'Muscle',
(int) 205 => 'Ovary',
(int) 231 => 'Placenta',
(int) 245 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000355311' => array(
'start' => '129836800',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-001'
),
'ENST00000368648' => array(
'start' => '129835283',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-002'
),
'ENST00000440978' => array(
'start' => '129837700',
'end' => '129842171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-004'
),
'ENST00000331244' => array(
'start' => '130136399',
'end' => '130179664',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-001'
),
'ENST00000368644' => array(
'start' => '130136399',
'end' => '130182881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-002'
),
'ENST00000481034' => array(
'start' => '130136399',
'end' => '130184521',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'GLRX3-003'
),
'ENST00000486974' => array(
'start' => '130159746',
'end' => '130160873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-005'
),
'ENST00000496195' => array(
'start' => '130179374',
'end' => '130180382',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-004'
),
'ENST00000619341' => array(
'start' => '130180185',
'end' => '130183643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-006'
),
'ENST00000306010' => array(
'start' => '129467184',
'end' => '129768007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MGMT-001'
),
'ENST00000462672' => array(
'start' => '129701627',
'end' => '129717867',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-004'
),
'ENST00000482547' => array(
'start' => '129467262',
'end' => '129537164',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MGMT-002'
),
'ENST00000482653' => array(
'start' => '129467229',
'end' => '129564162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-003'
),
'ENST00000446589' => array(
'start' => '128912879',
'end' => '128916271',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.2-001'
),
'ENST00000414581' => array(
'start' => '129278251',
'end' => '129291722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-168C9.1-001'
),
'ENST00000428273' => array(
'start' => '129768844',
'end' => '129769435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-109A6.3-001'
),
'ENST00000453367' => array(
'start' => '128958772',
'end' => '128960062',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.1-001'
),
'ENST00000435712' => array(
'start' => '130106046',
'end' => '130108481',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTAGE7P-001'
),
'ENST00000449940' => array(
'start' => '130131770',
'end' => '130132241',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP32-001'
),
'ENST00000454492' => array(
'start' => '128316282',
'end' => '128320214',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-264E18.1-001'
),
'ENST00000428178' => array(
'start' => '129700716',
'end' => '129701546',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-001'
),
'ENST00000593883' => array(
'start' => '129700258',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-005'
),
'ENST00000597245' => array(
'start' => '129700469',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-003'
),
'ENST00000597465' => array(
'start' => '129700148',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-004'
),
'ENST00000598332' => array(
'start' => '129700887',
'end' => '129701557',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-002'
),
'ENST00000456581' => array(
'start' => '130066374',
'end' => '130110817',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00959-001'
),
'ENST00000585165' => array(
'start' => '129487869',
'end' => '129487982',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355531.1-201'
),
'ENST00000579857' => array(
'start' => '129843299',
'end' => '129843374',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4297-201'
),
'ENST00000614150' => array(
'start' => '129845328',
'end' => '129845895',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.5-001'
),
'ENST00000613581' => array(
'start' => '129053003',
'end' => '129053052',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355537.1-201'
),
'ENST00000617939' => array(
'start' => '129837505',
'end' => '129837794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.4-001'
),
'ENST00000612008' => array(
'start' => '130104569',
'end' => '130104998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-500G10.5-001'
),
'ENSMUST00000033378' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-201'
),
'ENSMUST00000106118' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-202'
),
'ENSMUST00000168203' => array(
'start' => '137194698',
'end' => '137314414',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-203'
),
'ENSMUST00000169486' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-204'
),
'ENSMUST00000064404' => array(
'start' => '137437648',
'end' => '137468594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Glrx3-201'
),
'ENSMUST00000068996' => array(
'start' => '137375574',
'end' => '137410762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-001'
),
'ENSMUST00000117404' => array(
'start' => '137376137',
'end' => '137410735',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-004'
),
'ENSMUST00000120340' => array(
'start' => '137383046',
'end' => '137410732',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-003'
),
'ENSMUST00000135335' => array(
'start' => '137383014',
'end' => '137410756',
'transcript_biotype' => 'retained_intron',
'transcript_name' => '9430038I01Rik-002'
),
'ENSMUST00000145881' => array(
'start' => '137375574',
'end' => '137410756',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '9430038I01Rik-005'
),
'ENSMUST00000081510' => array(
'start' => '136894611',
'end' => '137128187',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mgmt-201'
),
'ENSMUST00000157244' => array(
'start' => '136509026',
'end' => '136509333',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24444-201'
),
'ENSMUST00000183000' => array(
'start' => '135952798',
'end' => '135953783',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9341-001'
),
'ENSDART00000085381' => array(
'start' => '44139598',
'end' => '44282750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-001'
),
'ENSDART00000138241' => array(
'start' => '44142064',
'end' => '44144930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
'ENSG00000108001' => array(
[maximum depth reached]
),
'ENSG00000108010' => array(
[maximum depth reached]
),
'ENSG00000170430' => array(
[maximum depth reached]
),
'ENSG00000224190' => array(
[maximum depth reached]
),
'ENSG00000225424' => array(
[maximum depth reached]
),
'ENSG00000227374' => array(
[maximum depth reached]
),
'ENSG00000233122' => array(
[maximum depth reached]
),
'ENSG00000233319' => array(
[maximum depth reached]
),
'ENSG00000234640' => array(
[maximum depth reached]
),
'ENSG00000237224' => array(
[maximum depth reached]
),
'ENSG00000237489' => array(
[maximum depth reached]
),
'ENSG00000275005' => array(
[maximum depth reached]
),
'ENSG00000275327' => array(
[maximum depth reached]
),
'ENSG00000277218' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adrenal',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Heart',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Breast',
(int) 67 => 'Lung',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Muscle',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Testis',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Bladder',
(int) 88 => 'Kidney',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Lung',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Brain',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Bladder',
(int) 100 => 'Colon',
(int) 101 => 'Kidney',
(int) 102 => 'Heart',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Liver',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Brain',
(int) 123 => 'Liver',
(int) 124 => 'Testis',
(int) 125 => 'Colon',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Colon',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis'
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000010476' => array(
[maximum depth reached]
),
'ENSMUSG00000031068' => array(
[maximum depth reached]
),
'ENSMUSG00000040139' => array(
[maximum depth reached]
),
'ENSMUSG00000054612' => array(
[maximum depth reached]
),
'ENSMUSG00000098031' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Ovary',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Breast',
(int) 98 => 'Kidney',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Heart',
(int) 112 => 'Kidney',
(int) 113 => 'Liver',
(int) 114 => 'Lung',
(int) 115 => 'Muscle',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis',
(int) 119 => 'Adipose',
(int) 120 => 'Breast',
(int) 121 => 'Colon',
(int) 122 => 'Heart',
(int) 123 => 'Kidney',
(int) 124 => 'Liver',
(int) 125 => 'Ovary'
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
'ENSDARG00000016300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA545',
'seq_start' => '29084',
'seq_end' => '194005',
'region_length' => '164921',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
)
$gene_el = array(
'ENSDART00000085381' => array(
'Brain' => array(
'average_FPKM' => '12.247',
'stddev_FPKM' => '5.53'
),
'Heart' => array(
'average_FPKM' => '1.181',
'stddev_FPKM' => '0.18'
),
'Kidney' => array(
'average_FPKM' => '0.497',
'stddev_FPKM' => '0.24'
)
),
'ENSDART00000138241' => array()
)
$gene_key = 'ENSDARG00000016300'
$is_first = false
$tran_el = array()
$tran_key = 'ENSDART00000138241'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000108001' => 'early B-cell factor 3',
'ENSG00000108010' => 'glutaredoxin 3',
'ENSG00000170430' => 'O-6-methylguanine-DNA methyltransferase',
'ENSG00000224190' => null,
'ENSG00000225424' => null,
'ENSG00000227374' => null,
'ENSG00000232985' => null,
'ENSG00000233122' => 'CTAGE family, member 7, pseudogene',
'ENSG00000233319' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 32',
'ENSG00000234640' => null,
'ENSG00000237224' => null,
'ENSG00000237489' => 'long intergenic non-protein coding RNA 959',
'ENSG00000266061' => null,
'ENSG00000266676' => 'microRNA 4297',
'ENSG00000275005' => null,
'ENSG00000275089' => null,
'ENSG00000275327' => null,
'ENSG00000277218' => null,
'ENSMUSG00000010476' => 'early B cell factor 3',
'ENSMUSG00000031068' => 'glutaredoxin 3',
'ENSMUSG00000040139' => 'RIKEN cDNA 9430038I01 gene',
'ENSMUSG00000054612' => 'O-6-methylguanine-DNA methyltransferase',
'ENSMUSG00000087869' => 'predicted gene, 24444',
'ENSMUSG00000098031' => 'predicted gene 9341',
'ENSDARG00000016300' => 'early B-cell factor 3'
),
'gene_name_arr' => array(
'ENSG00000108001' => 'EBF3',
'ENSG00000108010' => 'GLRX3',
'ENSG00000170430' => 'MGMT',
'ENSG00000224190' => 'RP11-442O18.2',
'ENSG00000225424' => 'RP11-168C9.1',
'ENSG00000227374' => 'RP11-109A6.3',
'ENSG00000232985' => 'RP11-442O18.1',
'ENSG00000233122' => 'CTAGE7P',
'ENSG00000233319' => 'PPIAP32',
'ENSG00000234640' => 'RP11-264E18.1',
'ENSG00000237224' => 'RP11-109A6.2',
'ENSG00000237489' => 'LINC00959',
'ENSG00000266061' => 'AL355531.1',
'ENSG00000266676' => 'MIR4297',
'ENSG00000275005' => 'RP11-234G16.5',
'ENSG00000275089' => 'AL355537.1',
'ENSG00000275327' => 'RP11-234G16.4',
'ENSG00000277218' => 'RP11-500G10.5',
'ENSMUSG00000010476' => 'Ebf3',
'ENSMUSG00000031068' => 'Glrx3',
'ENSMUSG00000040139' => '9430038I01Rik',
'ENSMUSG00000054612' => 'Mgmt',
'ENSMUSG00000087869' => 'Gm24444',
'ENSMUSG00000098031' => 'Gm9341',
'ENSDARG00000016300' => 'ebf3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 49 => 'Brain',
(int) 68 => 'Breast',
(int) 89 => 'Colon',
(int) 109 => 'Heart',
(int) 128 => 'Kidney',
(int) 148 => 'Liver',
(int) 168 => 'Lung',
(int) 189 => 'Muscle',
(int) 205 => 'Ovary',
(int) 231 => 'Placenta',
(int) 245 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000355311' => array(
'start' => '129836800',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-001'
),
'ENST00000368648' => array(
'start' => '129835283',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-002'
),
'ENST00000440978' => array(
'start' => '129837700',
'end' => '129842171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-004'
),
'ENST00000331244' => array(
'start' => '130136399',
'end' => '130179664',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-001'
),
'ENST00000368644' => array(
'start' => '130136399',
'end' => '130182881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-002'
),
'ENST00000481034' => array(
'start' => '130136399',
'end' => '130184521',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'GLRX3-003'
),
'ENST00000486974' => array(
'start' => '130159746',
'end' => '130160873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-005'
),
'ENST00000496195' => array(
'start' => '130179374',
'end' => '130180382',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-004'
),
'ENST00000619341' => array(
'start' => '130180185',
'end' => '130183643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-006'
),
'ENST00000306010' => array(
'start' => '129467184',
'end' => '129768007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MGMT-001'
),
'ENST00000462672' => array(
'start' => '129701627',
'end' => '129717867',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-004'
),
'ENST00000482547' => array(
'start' => '129467262',
'end' => '129537164',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MGMT-002'
),
'ENST00000482653' => array(
'start' => '129467229',
'end' => '129564162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-003'
),
'ENST00000446589' => array(
'start' => '128912879',
'end' => '128916271',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.2-001'
),
'ENST00000414581' => array(
'start' => '129278251',
'end' => '129291722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-168C9.1-001'
),
'ENST00000428273' => array(
'start' => '129768844',
'end' => '129769435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-109A6.3-001'
),
'ENST00000453367' => array(
'start' => '128958772',
'end' => '128960062',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.1-001'
),
'ENST00000435712' => array(
'start' => '130106046',
'end' => '130108481',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTAGE7P-001'
),
'ENST00000449940' => array(
'start' => '130131770',
'end' => '130132241',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP32-001'
),
'ENST00000454492' => array(
'start' => '128316282',
'end' => '128320214',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-264E18.1-001'
),
'ENST00000428178' => array(
'start' => '129700716',
'end' => '129701546',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-001'
),
'ENST00000593883' => array(
'start' => '129700258',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-005'
),
'ENST00000597245' => array(
'start' => '129700469',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-003'
),
'ENST00000597465' => array(
'start' => '129700148',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-004'
),
'ENST00000598332' => array(
'start' => '129700887',
'end' => '129701557',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-002'
),
'ENST00000456581' => array(
'start' => '130066374',
'end' => '130110817',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00959-001'
),
'ENST00000585165' => array(
'start' => '129487869',
'end' => '129487982',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355531.1-201'
),
'ENST00000579857' => array(
'start' => '129843299',
'end' => '129843374',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4297-201'
),
'ENST00000614150' => array(
'start' => '129845328',
'end' => '129845895',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.5-001'
),
'ENST00000613581' => array(
'start' => '129053003',
'end' => '129053052',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355537.1-201'
),
'ENST00000617939' => array(
'start' => '129837505',
'end' => '129837794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.4-001'
),
'ENST00000612008' => array(
'start' => '130104569',
'end' => '130104998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-500G10.5-001'
),
'ENSMUST00000033378' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-201'
),
'ENSMUST00000106118' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-202'
),
'ENSMUST00000168203' => array(
'start' => '137194698',
'end' => '137314414',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-203'
),
'ENSMUST00000169486' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-204'
),
'ENSMUST00000064404' => array(
'start' => '137437648',
'end' => '137468594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Glrx3-201'
),
'ENSMUST00000068996' => array(
'start' => '137375574',
'end' => '137410762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-001'
),
'ENSMUST00000117404' => array(
'start' => '137376137',
'end' => '137410735',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-004'
),
'ENSMUST00000120340' => array(
'start' => '137383046',
'end' => '137410732',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-003'
),
'ENSMUST00000135335' => array(
'start' => '137383014',
'end' => '137410756',
'transcript_biotype' => 'retained_intron',
'transcript_name' => '9430038I01Rik-002'
),
'ENSMUST00000145881' => array(
'start' => '137375574',
'end' => '137410756',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '9430038I01Rik-005'
),
'ENSMUST00000081510' => array(
'start' => '136894611',
'end' => '137128187',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mgmt-201'
),
'ENSMUST00000157244' => array(
'start' => '136509026',
'end' => '136509333',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24444-201'
),
'ENSMUST00000183000' => array(
'start' => '135952798',
'end' => '135953783',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9341-001'
),
'ENSDART00000085381' => array(
'start' => '44139598',
'end' => '44282750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-001'
),
'ENSDART00000138241' => array(
'start' => '44142064',
'end' => '44144930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
'ENSG00000108001' => array(
[maximum depth reached]
),
'ENSG00000108010' => array(
[maximum depth reached]
),
'ENSG00000170430' => array(
[maximum depth reached]
),
'ENSG00000224190' => array(
[maximum depth reached]
),
'ENSG00000225424' => array(
[maximum depth reached]
),
'ENSG00000227374' => array(
[maximum depth reached]
),
'ENSG00000233122' => array(
[maximum depth reached]
),
'ENSG00000233319' => array(
[maximum depth reached]
),
'ENSG00000234640' => array(
[maximum depth reached]
),
'ENSG00000237224' => array(
[maximum depth reached]
),
'ENSG00000237489' => array(
[maximum depth reached]
),
'ENSG00000275005' => array(
[maximum depth reached]
),
'ENSG00000275327' => array(
[maximum depth reached]
),
'ENSG00000277218' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adrenal',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Heart',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Breast',
(int) 67 => 'Lung',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Muscle',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Testis',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Bladder',
(int) 88 => 'Kidney',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Lung',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Brain',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Bladder',
(int) 100 => 'Colon',
(int) 101 => 'Kidney',
(int) 102 => 'Heart',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Liver',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Brain',
(int) 123 => 'Liver',
(int) 124 => 'Testis',
(int) 125 => 'Colon',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Colon',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis'
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000010476' => array(
[maximum depth reached]
),
'ENSMUSG00000031068' => array(
[maximum depth reached]
),
'ENSMUSG00000040139' => array(
[maximum depth reached]
),
'ENSMUSG00000054612' => array(
[maximum depth reached]
),
'ENSMUSG00000098031' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Ovary',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Breast',
(int) 98 => 'Kidney',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Heart',
(int) 112 => 'Kidney',
(int) 113 => 'Liver',
(int) 114 => 'Lung',
(int) 115 => 'Muscle',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis',
(int) 119 => 'Adipose',
(int) 120 => 'Breast',
(int) 121 => 'Colon',
(int) 122 => 'Heart',
(int) 123 => 'Kidney',
(int) 124 => 'Liver',
(int) 125 => 'Ovary'
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
'ENSDARG00000016300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000108001' => 'early B-cell factor 3',
'ENSG00000108010' => 'glutaredoxin 3',
'ENSG00000170430' => 'O-6-methylguanine-DNA methyltransferase',
'ENSG00000224190' => null,
'ENSG00000225424' => null,
'ENSG00000227374' => null,
'ENSG00000232985' => null,
'ENSG00000233122' => 'CTAGE family, member 7, pseudogene',
'ENSG00000233319' => 'peptidylprolyl isomerase A (cyclophilin A) pseudogene 32',
'ENSG00000234640' => null,
'ENSG00000237224' => null,
'ENSG00000237489' => 'long intergenic non-protein coding RNA 959',
'ENSG00000266061' => null,
'ENSG00000266676' => 'microRNA 4297',
'ENSG00000275005' => null,
'ENSG00000275089' => null,
'ENSG00000275327' => null,
'ENSG00000277218' => null,
'ENSMUSG00000010476' => 'early B cell factor 3',
'ENSMUSG00000031068' => 'glutaredoxin 3',
'ENSMUSG00000040139' => 'RIKEN cDNA 9430038I01 gene',
'ENSMUSG00000054612' => 'O-6-methylguanine-DNA methyltransferase',
'ENSMUSG00000087869' => 'predicted gene, 24444',
'ENSMUSG00000098031' => 'predicted gene 9341',
'ENSDARG00000016300' => 'early B-cell factor 3'
)
$gene_name_arr = array(
'ENSG00000108001' => 'EBF3',
'ENSG00000108010' => 'GLRX3',
'ENSG00000170430' => 'MGMT',
'ENSG00000224190' => 'RP11-442O18.2',
'ENSG00000225424' => 'RP11-168C9.1',
'ENSG00000227374' => 'RP11-109A6.3',
'ENSG00000232985' => 'RP11-442O18.1',
'ENSG00000233122' => 'CTAGE7P',
'ENSG00000233319' => 'PPIAP32',
'ENSG00000234640' => 'RP11-264E18.1',
'ENSG00000237224' => 'RP11-109A6.2',
'ENSG00000237489' => 'LINC00959',
'ENSG00000266061' => 'AL355531.1',
'ENSG00000266676' => 'MIR4297',
'ENSG00000275005' => 'RP11-234G16.5',
'ENSG00000275089' => 'AL355537.1',
'ENSG00000275327' => 'RP11-234G16.4',
'ENSG00000277218' => 'RP11-500G10.5',
'ENSMUSG00000010476' => 'Ebf3',
'ENSMUSG00000031068' => 'Glrx3',
'ENSMUSG00000040139' => '9430038I01Rik',
'ENSMUSG00000054612' => 'Mgmt',
'ENSMUSG00000087869' => 'Gm24444',
'ENSMUSG00000098031' => 'Gm9341',
'ENSDARG00000016300' => 'ebf3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0001',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '128166009',
'seq_end' => '130159815',
'region_length' => '1993806',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0002',
'tax_id' => '10090',
'chromosome' => '7',
'seq_start' => '135757037',
'seq_end' => '137452523',
'region_length' => '1695486',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '44002554',
'seq_end' => '44287411',
'region_length' => '284857',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0004',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '44887375',
'seq_end' => '45182177',
'region_length' => '294802',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0005',
'tax_id' => '7955',
'chromosome' => '14',
'seq_start' => '52950072',
'seq_end' => '52950407',
'region_length' => '335',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA191',
'seq_start' => '38344',
'seq_end' => '38498',
'region_length' => '154',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA227',
'seq_start' => '66154',
'seq_end' => '87086',
'region_length' => '20932',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA545',
'seq_start' => '29084',
'seq_end' => '194005',
'region_length' => '164921',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0009',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA649',
'seq_start' => '27386',
'seq_end' => '32979',
'region_length' => '5593',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 49 => 'Brain',
(int) 68 => 'Breast',
(int) 89 => 'Colon',
(int) 109 => 'Heart',
(int) 128 => 'Kidney',
(int) 148 => 'Liver',
(int) 168 => 'Lung',
(int) 189 => 'Muscle',
(int) 205 => 'Ovary',
(int) 231 => 'Placenta',
(int) 245 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000355311' => array(
'start' => '129836800',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-001'
),
'ENST00000368648' => array(
'start' => '129835283',
'end' => '129963841',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-002'
),
'ENST00000440978' => array(
'start' => '129837700',
'end' => '129842171',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'EBF3-004'
),
'ENST00000331244' => array(
'start' => '130136399',
'end' => '130179664',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-001'
),
'ENST00000368644' => array(
'start' => '130136399',
'end' => '130182881',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GLRX3-002'
),
'ENST00000481034' => array(
'start' => '130136399',
'end' => '130184521',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'GLRX3-003'
),
'ENST00000486974' => array(
'start' => '130159746',
'end' => '130160873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-005'
),
'ENST00000496195' => array(
'start' => '130179374',
'end' => '130180382',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-004'
),
'ENST00000619341' => array(
'start' => '130180185',
'end' => '130183643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GLRX3-006'
),
'ENST00000306010' => array(
'start' => '129467184',
'end' => '129768007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MGMT-001'
),
'ENST00000462672' => array(
'start' => '129701627',
'end' => '129717867',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-004'
),
'ENST00000482547' => array(
'start' => '129467262',
'end' => '129537164',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MGMT-002'
),
'ENST00000482653' => array(
'start' => '129467229',
'end' => '129564162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MGMT-003'
),
'ENST00000446589' => array(
'start' => '128912879',
'end' => '128916271',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.2-001'
),
'ENST00000414581' => array(
'start' => '129278251',
'end' => '129291722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-168C9.1-001'
),
'ENST00000428273' => array(
'start' => '129768844',
'end' => '129769435',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-109A6.3-001'
),
'ENST00000453367' => array(
'start' => '128958772',
'end' => '128960062',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O18.1-001'
),
'ENST00000435712' => array(
'start' => '130106046',
'end' => '130108481',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTAGE7P-001'
),
'ENST00000449940' => array(
'start' => '130131770',
'end' => '130132241',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'PPIAP32-001'
),
'ENST00000454492' => array(
'start' => '128316282',
'end' => '128320214',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-264E18.1-001'
),
'ENST00000428178' => array(
'start' => '129700716',
'end' => '129701546',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-001'
),
'ENST00000593883' => array(
'start' => '129700258',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-005'
),
'ENST00000597245' => array(
'start' => '129700469',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-003'
),
'ENST00000597465' => array(
'start' => '129700148',
'end' => '129701262',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-004'
),
'ENST00000598332' => array(
'start' => '129700887',
'end' => '129701557',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-109A6.2-002'
),
'ENST00000456581' => array(
'start' => '130066374',
'end' => '130110817',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00959-001'
),
'ENST00000585165' => array(
'start' => '129487869',
'end' => '129487982',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355531.1-201'
),
'ENST00000579857' => array(
'start' => '129843299',
'end' => '129843374',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4297-201'
),
'ENST00000614150' => array(
'start' => '129845328',
'end' => '129845895',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.5-001'
),
'ENST00000613581' => array(
'start' => '129053003',
'end' => '129053052',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL355537.1-201'
),
'ENST00000617939' => array(
'start' => '129837505',
'end' => '129837794',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-234G16.4-001'
),
'ENST00000612008' => array(
'start' => '130104569',
'end' => '130104998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-500G10.5-001'
),
'ENSMUST00000033378' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-201'
),
'ENSMUST00000106118' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-202'
),
'ENSMUST00000168203' => array(
'start' => '137194698',
'end' => '137314414',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-203'
),
'ENSMUST00000169486' => array(
'start' => '137193673',
'end' => '137314445',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ebf3-204'
),
'ENSMUST00000064404' => array(
'start' => '137437648',
'end' => '137468594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Glrx3-201'
),
'ENSMUST00000068996' => array(
'start' => '137375574',
'end' => '137410762',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-001'
),
'ENSMUST00000117404' => array(
'start' => '137376137',
'end' => '137410735',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-004'
),
'ENSMUST00000120340' => array(
'start' => '137383046',
'end' => '137410732',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '9430038I01Rik-003'
),
'ENSMUST00000135335' => array(
'start' => '137383014',
'end' => '137410756',
'transcript_biotype' => 'retained_intron',
'transcript_name' => '9430038I01Rik-002'
),
'ENSMUST00000145881' => array(
'start' => '137375574',
'end' => '137410756',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '9430038I01Rik-005'
),
'ENSMUST00000081510' => array(
'start' => '136894611',
'end' => '137128187',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mgmt-201'
),
'ENSMUST00000157244' => array(
'start' => '136509026',
'end' => '136509333',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm24444-201'
),
'ENSMUST00000183000' => array(
'start' => '135952798',
'end' => '135953783',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9341-001'
),
'ENSDART00000085381' => array(
'start' => '44139598',
'end' => '44282750',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-001'
),
'ENSDART00000138241' => array(
'start' => '44142064',
'end' => '44144930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ebf3-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007OP_0001' => array(
'genes_in_region' => array(
'ENSG00000108001' => array(
[maximum depth reached]
),
'ENSG00000108010' => array(
[maximum depth reached]
),
'ENSG00000170430' => array(
[maximum depth reached]
),
'ENSG00000224190' => array(
[maximum depth reached]
),
'ENSG00000225424' => array(
[maximum depth reached]
),
'ENSG00000227374' => array(
[maximum depth reached]
),
'ENSG00000233122' => array(
[maximum depth reached]
),
'ENSG00000233319' => array(
[maximum depth reached]
),
'ENSG00000234640' => array(
[maximum depth reached]
),
'ENSG00000237224' => array(
[maximum depth reached]
),
'ENSG00000237489' => array(
[maximum depth reached]
),
'ENSG00000275005' => array(
[maximum depth reached]
),
'ENSG00000275327' => array(
[maximum depth reached]
),
'ENSG00000277218' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Ovary',
(int) 24 => 'Testis',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adrenal',
(int) 40 => 'Bladder',
(int) 41 => 'Brain',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Lung',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Heart',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Bladder',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Muscle',
(int) 63 => 'Ovary',
(int) 64 => 'Placenta',
(int) 65 => 'Testis',
(int) 66 => 'Breast',
(int) 67 => 'Lung',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Muscle',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adrenal',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Testis',
(int) 80 => 'Breast',
(int) 81 => 'Colon',
(int) 82 => 'Kidney',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Bladder',
(int) 88 => 'Kidney',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Lung',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Brain',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Bladder',
(int) 100 => 'Colon',
(int) 101 => 'Kidney',
(int) 102 => 'Heart',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Liver',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Brain',
(int) 123 => 'Liver',
(int) 124 => 'Testis',
(int) 125 => 'Colon',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Colon',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis'
)
),
'CIL_0007OP_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000010476' => array(
[maximum depth reached]
),
'ENSMUSG00000031068' => array(
[maximum depth reached]
),
'ENSMUSG00000040139' => array(
[maximum depth reached]
),
'ENSMUSG00000054612' => array(
[maximum depth reached]
),
'ENSMUSG00000098031' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Ovary',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Colon',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Breast',
(int) 62 => 'Colon',
(int) 63 => 'Heart',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Adrenal',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Heart',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Breast',
(int) 98 => 'Kidney',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Heart',
(int) 112 => 'Kidney',
(int) 113 => 'Liver',
(int) 114 => 'Lung',
(int) 115 => 'Muscle',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis',
(int) 119 => 'Adipose',
(int) 120 => 'Breast',
(int) 121 => 'Colon',
(int) 122 => 'Heart',
(int) 123 => 'Kidney',
(int) 124 => 'Liver',
(int) 125 => 'Ovary'
)
),
'CIL_0007OP_0003' => array(
'genes_in_region' => array(
'ENSDARG00000016300' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007OP_0008',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA545',
'seq_start' => '29084',
'seq_end' => '194005',
'region_length' => '164921',
'region_type' => 'UCNEbase',
'el_id' => 'EBF3'
)
)
$gene_el = array(
'ENSDART00000085381' => array(
'Brain' => array(
'average_FPKM' => '12.247',
'stddev_FPKM' => '5.53'
),
'Heart' => array(
'average_FPKM' => '1.181',
'stddev_FPKM' => '0.18'
),
'Kidney' => array(
'average_FPKM' => '0.497',
'stddev_FPKM' => '0.24'
)
),
'ENSDART00000138241' => array()
)
$gene_key = 'ENSDARG00000016300'
$is_first = false
$tran_el = array()
$tran_key = 'ENSDART00000138241'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(EBF3)