C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007UL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs232 VISTA 9606 10:129592822-130194584
GeneTranscriptPositionBiotype
ENSG00000108001 (EBF3)
early B-cell factor 3 		ENST00000355311 (EBF3-001) 129836800-129963841 protein_coding
ENST00000368648 (EBF3-002) 129835283-129963841 protein_coding
ENST00000440978 (EBF3-004) 129837700-129842171 protein_coding
ENSG00000108010 (GLRX3)
glutaredoxin 3 		ENST00000331244 (GLRX3-001) 130136399-130179664 protein_coding
ENST00000368644 (GLRX3-002) 130136399-130182881 protein_coding
ENST00000481034 (GLRX3-003) 130136399-130184521 nonsense_mediated_decay
ENST00000486974 (GLRX3-005) 130159746-130160873 processed_transcript
ENST00000496195 (GLRX3-004) 130179374-130180382 processed_transcript
ENST00000619341 (GLRX3-006) 130180185-130183643 processed_transcript
ENSG00000170430 (MGMT)
O-6-methylguanine-DNA methyltransferase 		ENST00000306010 (MGMT-001) 129467184-129768007 protein_coding
ENST00000462672 (MGMT-004) 129701627-129717867 processed_transcript
ENST00000482547 (MGMT-002) 129467262-129537164 retained_intron
ENST00000482653 (MGMT-003) 129467229-129564162 processed_transcript
ENSG00000227374 (RP11-109A6.3)
 ENST00000428273 (RP11-109A6.3-001) 129768844-129769435 lincRNA
ENSG00000233122 (CTAGE7P)
CTAGE family, member 7, pseudogene 		ENST00000435712 (CTAGE7P-001) 130106046-130108481 processed_pseudogene
ENSG00000233319 (PPIAP32)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 32 		ENST00000449940 (PPIAP32-001) 130131770-130132241 processed_pseudogene
ENSG00000237224 (RP11-109A6.2)
 ENST00000428178 (RP11-109A6.2-001) 129700716-129701546 antisense
ENST00000593883 (RP11-109A6.2-005) 129700258-129701262 antisense
ENST00000597245 (RP11-109A6.2-003) 129700469-129701262 antisense
ENST00000597465 (RP11-109A6.2-004) 129700148-129701262 antisense
ENST00000598332 (RP11-109A6.2-002) 129700887-129701557 antisense
ENSG00000237489 (LINC00959)
long intergenic non-protein coding RNA 959 		ENST00000456581 (LINC00959-001) 130066374-130110817 lincRNA
ENSG00000275005 (RP11-234G16.5)
 ENST00000614150 (RP11-234G16.5-001) 129845328-129845895 antisense
ENSG00000275327 (RP11-234G16.4)
 ENST00000617939 (RP11-234G16.4-001) 129837505-129837794 antisense
ENSG00000277218 (RP11-500G10.5)
 ENST00000612008 (RP11-500G10.5-001) 130104569-130104998 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007UL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs232 VISTA 10090 7:136950056-137551790
GeneTranscriptPositionBiotype
ENSMUSG00000010476 (Ebf3)
early B cell factor 3 		ENSMUST00000033378 (Ebf3-201) 137193673-137314445 protein_coding
ENSMUST00000106118 (Ebf3-202) 137193673-137314445 protein_coding
ENSMUST00000168203 (Ebf3-203) 137194698-137314414 protein_coding
ENSMUST00000169486 (Ebf3-204) 137193673-137314445 protein_coding
ENSMUSG00000031068 (Glrx3)
glutaredoxin 3 		ENSMUST00000064404 (Glrx3-201) 137437648-137468594 protein_coding
ENSMUSG00000040139 (9430038I01Rik)
RIKEN cDNA 9430038I01 gene 		ENSMUST00000068996 (9430038I01Rik-001) 137375574-137410762 protein_coding
ENSMUST00000117404 (9430038I01Rik-004) 137376137-137410735 protein_coding
ENSMUST00000120340 (9430038I01Rik-003) 137383046-137410732 protein_coding
ENSMUST00000135335 (9430038I01Rik-002) 137383014-137410756 retained_intron
ENSMUST00000145881 (9430038I01Rik-005) 137375574-137410756 processed_transcript
ENSMUSG00000054612 (Mgmt)
O-6-methylguanine-DNA methyltransferase 		ENSMUST00000081510 (Mgmt-201) 136894611-137128187 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UL_0001ENSG00000108001ENST00000355311ENST00000368648ENST00000440978ENSG00000108010ENST00000331244ENST00000368644ENST00000481034ENST00000486974ENST00000496195ENST00000619341ENSG00000170430ENST00000306010ENST00000462672ENST00000482547ENST00000482653ENSG00000227374ENST00000428273ENSG00000233122ENST00000435712ENSG00000233319ENST00000449940ENSG00000237224ENST00000428178ENST00000593883ENST00000597245ENST00000597465ENST00000598332ENSG00000237489ENST00000456581ENSG00000275005ENST00000614150ENSG00000275327ENST00000617939ENSG00000277218ENST00000612008CIL_0007UL_0002ENSMUSG00000010476ENSMUST00000033378ENSMUST00000106118ENSMUST00000168203ENSMUST00000169486ENSMUSG00000031068ENSMUST00000064404ENSMUSG00000040139ENSMUST00000068996ENSMUST00000117404ENSMUST00000120340ENSMUST00000135335ENSMUST00000145881ENSMUSG00000054612ENSMUST00000081510
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UL_0001ENSG00000108001ENST00000355311ENST00000368648ENST00000440978ENSG00000108010ENST00000331244ENST00000368644ENST00000481034ENSG00000170430ENST00000306010ENST00000482547ENST00000482653ENSG00000227374ENST00000428273ENSG00000233122ENST00000435712ENSG00000233319ENST00000449940ENSG00000237224ENST00000428178ENST00000593883ENST00000597245ENST00000597465ENST00000598332ENSG00000237489ENST00000456581ENSG00000275005ENST00000614150ENSG00000275327ENST00000617939ENSG00000277218ENST00000612008CIL_0007UL_0002ENSMUSG00000010476ENSMUST00000033378ENSMUST00000106118ENSMUST00000168203ENSMUST00000169486ENSMUSG00000031068ENSMUST00000064404ENSMUSG00000040139ENSMUST00000068996ENSMUST00000117404ENSMUST00000120340ENSMUST00000135335ENSMUST00000145881ENSMUSG00000054612ENSMUST00000081510
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108001 ENST00000355311 1.982±0.00 N/A 0.031±0.00 0.032±0.00 0.356±0.00 0.367±0.15 0.264±0.00 N/A 1.250±0.00 0.096±0.00 0.426±0.22 0.100±0.00 N/A N/A
ENST00000368648 4.021±0.00 4.286±0.00 0.073±0.00 N/A 2.722±2.30 0.451±0.42 0.377±0.00 0.260±0.00 0.030±0.00 0.114±0.01 0.532±0.00 0.234±0.11 0.799±0.49 0.904±0.29
ENST00000440978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A 1.734±0.00
ENSG00000108010 ENST00000331244 12.970±0.00 13.402±0.00 1.209±0.00 6.149±2.62 10.113±0.00 10.809±0.00 8.941±8.26 18.670±0.00 13.112±0.00 5.605±4.34 4.603±3.69 27.239±21.92 26.069±5.92 46.833±2.93
ENST00000368644 N/A 1.502±0.00 0.174±0.00 0.487±0.17 0.915±0.10 0.257±0.00 0.220±0.00 0.734±0.44 N/A 0.889±0.00 0.250±0.00 1.175±0.45 N/A N/A
ENST00000481034 N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A N/A 0.376±0.00 N/A 6.300±4.91 N/A N/A
ENST00000486974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170430 ENST00000306010 6.659±0.00 8.138±0.00 3.417±0.00 3.483±0.58 7.261±4.48 4.992±2.13 2.406±0.99 12.080±4.81 13.063±8.51 5.481±3.25 3.465±0.84 7.045±4.45 8.314±4.19 10.341±4.46
ENST00000462672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482547 N/A N/A N/A N/A 1.238±0.00 N/A N/A N/A N/A 0.733±0.00 N/A 1.462±0.00 N/A N/A
ENST00000482653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
ENSG00000227374 ENST00000428273 N/A 0.205±0.00 N/A N/A 0.239±0.08 0.467±0.00 N/A N/A 0.429±0.00 0.402±0.33 N/A 0.162±0.00 N/A 0.189±0.00
ENSG00000233122 ENST00000435712 N/A N/A N/A N/A 0.024±0.00 0.035±0.00 N/A 0.109±0.00 N/A N/A 0.017±0.00 0.065±0.05 0.007±0.00 1.277±0.91
ENSG00000233319 ENST00000449940 N/A N/A 0.169±0.00 N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000237224 ENST00000428178 N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00
ENST00000593883 N/A N/A 0.490±0.00 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597245 N/A N/A 0.473±0.00 N/A N/A 0.175±0.00 N/A 0.223±0.00 N/A N/A N/A N/A N/A N/A
ENST00000597465 N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A N/A 0.391±0.00 N/A N/A N/A 0.319±0.00
ENST00000598332 N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.18 N/A N/A N/A N/A 0.300±0.00
ENSG00000237489 ENST00000456581 0.203±0.00 0.970±0.00 0.038±0.00 0.070±0.03 0.438±0.37 0.447±0.17 0.075±0.03 0.222±0.16 0.396±0.19 0.130±0.09 0.311±0.17 0.327±0.30 0.128±0.04 0.606±0.09
ENSG00000275005 ENST00000614150 0.210±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A 0.260±0.23 N/A N/A N/A N/A 0.335±0.04
ENSG00000275327 ENST00000617939 N/A N/A N/A N/A N/A 2.647±0.00 N/A N/A 0.309±0.00 3.680±0.00 N/A N/A N/A N/A
ENSG00000277218 ENST00000612008 0.127±0.00 0.371±0.00 N/A 0.025±0.00 0.046±0.00 0.373±0.31 0.370±0.30 0.758±0.69 0.169±0.00 0.841±0.00 N/A 0.652±0.20 0.118±0.00 0.376±0.24
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010476 ENSMUST00000033378 3.266±1.49 0.938±0.65 0.174±0.01 16.122±8.05 1.907±0.86 0.514±0.03 0.783±0.50 0.178±0.11 0.032±0.03 0.183±0.00 0.736±0.50 0.391±0.26 0.205±0.09 0.291±0.00
ENSMUST00000106118 N/A 0.341±0.00 N/A 8.270±0.00 2.308±0.00 0.068±0.00 0.337±0.00 0.180±0.08 N/A N/A N/A 0.105±0.00 N/A N/A
ENSMUST00000168203 1.915±1.14 1.712±0.41 N/A N/A 3.207±1.62 0.394±0.17 0.542±0.00 0.185±0.09 0.023±0.01 0.156±0.04 N/A 0.528±0.19 0.128±0.00 0.552±0.32
ENSMUST00000169486 0.813±0.20 N/A 0.088±0.00 5.713±0.00 1.477±0.57 0.342±0.20 0.676±0.15 N/A 0.039±0.03 0.081±0.00 0.545±0.27 0.320±0.09 0.268±0.00 N/A
ENSMUSG00000031068 ENSMUST00000064404 15.528±2.82 6.839±4.02 25.342±3.40 40.183±5.79 12.214±3.60 12.114±1.76 17.406±2.13 17.607±4.22 20.739±8.99 10.697±1.03 37.966±16.62 21.151±13.90 48.729±24.09 91.722±11.21
ENSMUSG00000040139 ENSMUST00000068996 2.713±0.33 3.001±0.37 2.756±0.49 1.481±0.71 3.440±1.15 6.738±0.52 2.151±0.45 2.901±0.47 4.271±0.65 5.174±0.08 1.705±0.44 7.140±3.81 4.028±0.97 0.736±0.30
ENSMUST00000117404 1.472±0.07 1.738±0.51 N/A 0.898±0.00 1.345±0.28 1.606±0.13 N/A 1.024±0.17 2.386±0.64 1.201±0.09 1.062±0.25 3.658±0.95 3.674±1.47 0.302±0.00
ENSMUST00000120340 0.481±0.10 0.649±0.00 0.172±0.00 0.183±0.10 0.394±0.08 N/A 0.128±0.00 0.136±0.00 0.224±0.00 0.432±0.11 0.061±0.00 0.517±0.26 0.124±0.01 0.089±0.06
ENSMUST00000135335 N/A 0.593±0.13 N/A N/A 0.390±0.01 N/A N/A 0.152±0.00 N/A N/A N/A 0.559±0.06 N/A 0.187±0.00
ENSMUST00000145881 N/A N/A N/A N/A N/A N/A N/A N/A 1.076±0.00 N/A 0.333±0.00 1.216±0.27 N/A 0.402±0.00
ENSMUSG00000054612 ENSMUST00000081510 14.312±4.28 5.901±1.17 8.426±0.45 1.085±0.55 9.031±2.64 4.474±0.76 7.544±1.02 8.054±1.78 13.052±8.10 3.499±0.72 4.571±1.26 12.717±3.93 2.536±2.14 2.302±0.49

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