C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC052040
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040282 BC052040 10090 + 2:115581716-115778768 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110918 BC052040-001 115581733-115778768 protein_coding
  ENSMUST00000147968 BC052040-002 115581801-115640643 processed_transcript
  ENSMUST00000166472 BC052040-201 115581716-115778768 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110918ENSMUST00000166472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110918 1.149±0.68 0.230±0.04 2.136±0.13 3.240±1.87 1.108±0.33 0.815±0.31 0.920±0.22 1.172±0.38 2.960±1.60 1.021±0.33 0.907±0.23 1.951±0.83 4.328±2.16 1.010±0.51
ENSMUST00000166472 0.705±0.34 1.009±0.38 N/A 0.773±0.00 0.459±0.14 1.272±0.27 0.354±0.07 0.527±0.18 1.446±0.37 0.746±0.05 0.124±0.01 1.806±0.85 1.221±0.00 1.027±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0002 UCNEbase 2:114412124-116821493
CIL_0006HI CIL_0006HI_0002 CGP 2:114516416-115778768
CIL_0008V8 CIL_0008V8_0002 VISTA 2:115237684-115839308
CIL_00088L CIL_00088L_0002 VISTA 2:115356958-115958248
CIL_0008GX CIL_0008GX_0002 VISTA 2:115358281-115959712
CIL_00084J CIL_00084J_0002 VISTA 2:115369514-115969885
CIL_00087U CIL_00087U_0002 VISTA 2:115567988-116170503
CIL_0008KD CIL_0008KD_0002 VISTA 2:115571243-116172482
CIL_0006QS CIL_0006QS_0002 CGP 2:115581716-116065839

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070461 C17H15orf41 chromosome 15 open reading frame 41 protein_coding Danio_rerio
ENSG00000186073 C15orf41 chromosome 15 open reading frame 41 protein_coding Homo_sapiens

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