C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC052040
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110918 BC052040-001 ENSMUSG00000040282 10090 + 2:115581733-115778768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110918
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110918 1.149±0.68 0.230±0.04 2.136±0.13 3.240±1.87 1.108±0.33 0.815±0.31 0.920±0.22 1.172±0.38 2.960±1.60 1.021±0.33 0.907±0.23 1.951±0.83 4.328±2.16 1.010±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0002 UCNEbase 2:114412124-116821493
CIL_0006HI CIL_0006HI_0002 CGP 2:114516416-115778768
CIL_0008V8 CIL_0008V8_0002 VISTA 2:115237684-115839308
CIL_00088L CIL_00088L_0002 VISTA 2:115356958-115958248
CIL_0008GX CIL_0008GX_0002 VISTA 2:115358281-115959712
CIL_00084J CIL_00084J_0002 VISTA 2:115369514-115969885
CIL_00087U CIL_00087U_0002 VISTA 2:115567988-116170503
CIL_0008KD CIL_0008KD_0002 VISTA 2:115571243-116172482
CIL_0006QS CIL_0006QS_0002 CGP 2:115581716-116065839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103434 C17H15orf41-201 protein_coding Danio_rerio 0 243
ENST00000338183 C15orf41-201 protein_coding Homo_sapiens 0 1339
ENST00000437989 C15orf41-002 protein_coding Homo_sapiens 0 1218
ENST00000562489 C15orf41-014 protein_coding Homo_sapiens 0 715
ENST00000562877 C15orf41-004 protein_coding Homo_sapiens 0 1024
ENST00000563167 C15orf41-013 protein_coding Homo_sapiens 0 211
ENST00000564586 C15orf41-011 protein_coding Homo_sapiens 0 265
ENST00000565792 C15orf41-005 processed_transcript Homo_sapiens 0 560
ENST00000566621 C15orf41-001 protein_coding Homo_sapiens 0 1493
ENST00000566677 C15orf41-006 retained_intron Homo_sapiens 0 481
ENST00000566807 C15orf41-010 protein_coding Homo_sapiens 0 680
ENST00000566932 C15orf41-012 processed_transcript Homo_sapiens 0 268
ENST00000567389 C15orf41-003 protein_coding Homo_sapiens 0 1339
ENST00000567573 C15orf41-009 processed_transcript Homo_sapiens 0 331
ENST00000569302 C15orf41-008 protein_coding Homo_sapiens 0 1415
ENST00000570265 C15orf41-007 processed_transcript Homo_sapiens 0 1011

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