C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil alpha-helical rod protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040312 Cchcr1 10090 + 17:35517100-35531015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045956 Cchcr1-001 35517176-35531015 protein_coding
  ENSMUST00000164242 Cchcr1-002 35517100-35530996 protein_coding
  ENSMUST00000172893 Cchcr1-003 35528892-35529433 retained_intron
  ENSMUST00000173582 Cchcr1-006 35524604-35525356 retained_intron
  ENSMUST00000173903 Cchcr1-004 35517463-35531005 protein_coding
  ENSMUST00000173986 Cchcr1-005 35519886-35521161 processed_transcript
  ENSMUST00000174827 Cchcr1-007 35517116-35520530 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045956ENSMUST00000164242ENSMUST00000173903ENSMUST00000174827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045956 0.808±0.00 0.676±0.00 N/A 0.935±0.51 1.858±0.00 1.544±0.38 0.305±0.00 0.572±0.11 1.273±0.89 0.673±0.20 N/A 1.970±0.94 0.587±0.11 79.018±19.78
ENSMUST00000164242 1.787±0.56 0.363±0.00 6.202±0.03 2.403±0.41 0.965±0.01 3.307±0.95 N/A 1.093±0.28 3.998±2.53 1.443±0.42 0.319±0.18 2.166±1.04 1.357±1.06 N/A
ENSMUST00000173903 N/A N/A N/A 0.579±0.20 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A 0.414±0.19 56.471±2.92
ENSMUST00000174827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 1.993±0.27 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005814 ISS centriole
GO:0006611 IDA protein export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092464 CCHCR1 (1 of 2) coiled-coil alpha-helical rod protein 1 protein_coding Danio_rerio
ENSDARG00000093389 CCHCR1 (2 of 2) coiled-coil alpha-helical rod protein 1 protein_coding Danio_rerio
ENSG00000204536 CCHCR1 coiled-coil alpha-helical rod protein 1 protein_coding Homo_sapiens

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