C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil alpha-helical rod protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204536 CCHCR1 9606 - 6:31142439-31158238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376266 CCHCR1-001 31142439-31158238 protein_coding
  ENST00000396263 CCHCR1-003 31142444-31158201 protein_coding
  ENST00000396268 CCHCR1-002 31142439-31157789 protein_coding
  ENST00000426967 CCHCR1-007 31154674-31157788 protein_coding
  ENST00000428174 CCHCR1-004 31154728-31158205 protein_coding
  ENST00000448141 CCHCR1-019 31150975-31158209 protein_coding
  ENST00000448162 CCHCR1-005 31151092-31158081 protein_coding
  ENST00000451521 CCHCR1-011 31142520-31157607 protein_coding
  ENST00000455279 CCHCR1-009 31154572-31158217 protein_coding
  ENST00000464012 CCHCR1-012 31150867-31154751 retained_intron
  ENST00000467553 CCHCR1-013 31143060-31145459 retained_intron
  ENST00000475684 CCHCR1-010 31156232-31158172 retained_intron
  ENST00000480060 CCHCR1-016 31149160-31158191 processed_transcript
  ENST00000486060 CCHCR1-014 31143096-31145115 retained_intron
  ENST00000488920 CCHCR1-008 31156751-31157772 nonsense_mediated_decay
  ENST00000502557 CCHCR1-027 31154674-31158139 protein_coding
  ENST00000503420 CCHCR1-026 31154543-31158160 protein_coding
  ENST00000503934 CCHCR1-021 31154611-31158194 protein_coding
  ENST00000505392 CCHCR1-031 31150885-31158194 retained_intron
  ENST00000506831 CCHCR1-029 31156853-31157791 protein_coding
  ENST00000507226 CCHCR1-024 31154742-31158189 protein_coding
  ENST00000507459 CCHCR1-033 31150748-31158194 nonsense_mediated_decay
  ENST00000507751 CCHCR1-028 31154556-31158073 protein_coding
  ENST00000507829 CCHCR1-018 31154683-31158214 protein_coding
  ENST00000507892 CCHCR1-025 31156838-31158160 protein_coding
  ENST00000508683 CCHCR1-020 31151070-31158203 protein_coding
  ENST00000508852 CCHCR1-032 31150745-31158194 nonsense_mediated_decay
  ENST00000509552 CCHCR1-017 31144520-31158194 retained_intron
  ENST00000512418 CCHCR1-030 31150502-31158194 nonsense_mediated_decay
  ENST00000513222 CCHCR1-023 31154531-31158194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376266ENST00000396263ENST00000396268ENST00000451521ENST00000464012ENST00000475684ENST00000505392ENST00000506831ENST00000507459ENST00000509552ENST00000513222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376266 5.261±0.00 1.115±0.00 N/A 1.557±1.08 N/A 0.993±0.51 N/A 1.051±0.40 0.794±0.00 2.225±0.00 1.506±0.00 9.501±0.88 N/A 9.242±0.00
ENST00000396263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A N/A
ENST00000396268 N/A 0.532±0.00 N/A N/A N/A 0.630±0.00 N/A N/A N/A 0.849±0.00 N/A N/A N/A 38.940±32.97
ENST00000451521 N/A N/A N/A N/A N/A 0.689±0.00 N/A 1.683±0.00 N/A 0.626±0.00 N/A N/A N/A 8.110±0.00
ENST00000464012 N/A N/A N/A N/A 2.299±0.00 N/A N/A 1.852±0.00 N/A N/A N/A 20.993±0.00 N/A N/A
ENST00000475684 N/A N/A 0.261±0.00 N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000505392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.609±0.00 N/A N/A N/A
ENST00000506831 N/A N/A 0.325±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A
ENST00000509552 N/A N/A N/A N/A N/A 0.693±0.00 N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A
ENST00000513222 N/A N/A 0.451±0.00 N/A N/A N/A 0.864±0.00 N/A N/A N/A 7.139±0.00 N/A 3.821±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005814 IDA centriole
GO:0006611 IEA protein export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092464 CCHCR1 (1 of 2) coiled-coil alpha-helical rod protein 1 protein_coding Danio_rerio
ENSDARG00000093389 CCHCR1 (2 of 2) coiled-coil alpha-helical rod protein 1 protein_coding Danio_rerio
ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 protein_coding Mus_musculus

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