C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil alpha-helical rod protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164242 Cchcr1-002 ENSMUSG00000040312 10090 + 17:35517100-35530996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000164242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000164242 1.787±0.56 0.363±0.00 6.202±0.03 2.403±0.41 0.965±0.01 3.307±0.95 1.093±0.28 3.998±2.53 1.443±0.42 0.319±0.18 2.166±1.04 1.357±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005814 ISS centriole
GO:0006611 IDA protein export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376266 CCHCR1-001 protein_coding Homo_sapiens 0 1796
ENST00000383341 CCHCR1-001 protein_coding Homo_sapiens 0 1790
ENST00000383527 CCHCR1-001 protein_coding Homo_sapiens 0 1801
ENST00000396263 CCHCR1-003 protein_coding Homo_sapiens 0 1094
ENST00000396268 CCHCR1-002 protein_coding Homo_sapiens 0 1788
ENST00000400351 CCHCR1-003 protein_coding Homo_sapiens 0 1088
ENST00000400352 CCHCR1-002 protein_coding Homo_sapiens 0 1783
ENST00000400406 CCHCR1-003 protein_coding Homo_sapiens 0 1094
ENST00000400412 CCHCR1-002 protein_coding Homo_sapiens 0 1794
ENST00000412577 CCHCR1-006 protein_coding Homo_sapiens 0 379
ENST00000414614 CCHCR1-003 protein_coding Homo_sapiens 0 1088
ENST00000416163 CCHCR1-002 protein_coding Homo_sapiens 0 1783
ENST00000416392 CCHCR1-001 protein_coding Homo_sapiens 0 1807
ENST00000417501 CCHCR1-006 protein_coding Homo_sapiens 0 368
ENST00000417776 CCHCR1-015 protein_coding Homo_sapiens 0 601
ENST00000419528 CCHCR1-002 protein_coding Homo_sapiens 0 1799
ENST00000419592 CCHCR1-015 protein_coding Homo_sapiens 0 601
ENST00000420262 CCHCR1-015 protein_coding Homo_sapiens 0 595
ENST00000423825 CCHCR1-006 protein_coding Homo_sapiens 0 379
ENST00000425351 CCHCR1-009 protein_coding Homo_sapiens 0 418
ENST00000425500 CCHCR1-009 protein_coding Homo_sapiens 0 424
ENST00000425620 CCHCR1-001 protein_coding Homo_sapiens 0 1790
ENST00000428677 CCHCR1-003 protein_coding Homo_sapiens 0 1099
ENST00000429943 CCHCR1-011 protein_coding Homo_sapiens 0 785
ENST00000431539 CCHCR1-015 protein_coding Homo_sapiens 0 601
ENST00000433804 CCHCR1-001 protein_coding Homo_sapiens 0 1807
ENST00000437918 CCHCR1-009 protein_coding Homo_sapiens 0 407
ENST00000438739 CCHCR1-005 protein_coding Homo_sapiens 0 521
ENST00000438812 CCHCR1-005 protein_coding Homo_sapiens 0 508
ENST00000439536 CCHCR1-011 protein_coding Homo_sapiens 0 802
ENST00000439820 CCHCR1-005 protein_coding Homo_sapiens 0 516
ENST00000444737 CCHCR1-011 protein_coding Homo_sapiens 0 785
ENST00000447252 CCHCR1-002 protein_coding Homo_sapiens 0 1799
ENST00000447874 CCHCR1-005 protein_coding Homo_sapiens 0 521
ENST00000448141 CCHCR1-019 protein_coding Homo_sapiens 0 470
ENST00000448162 CCHCR1-005 protein_coding Homo_sapiens 0 521
ENST00000449364 CCHCR1-011 protein_coding Homo_sapiens 0 785
ENST00000450631 CCHCR1-006 protein_coding Homo_sapiens 0 368
ENST00000451470 CCHCR1-015 protein_coding Homo_sapiens 0 595
ENST00000451521 CCHCR1-011 protein_coding Homo_sapiens 0 1635
ENST00000452333 CCHCR1-003 protein_coding Homo_sapiens 0 1099
ENST00000453360 CCHCR1-009 protein_coding Homo_sapiens 0 418
ENST00000454570 CCHCR1-005 protein_coding Homo_sapiens 0 508
ENST00000455279 CCHCR1-009 protein_coding Homo_sapiens 0 424
ENST00000455669 CCHCR1-009 protein_coding Homo_sapiens 0 407
ENST00000456365 CCHCR1-011 protein_coding Homo_sapiens 0 802
ENST00000457929 CCHCR1-006 protein_coding Homo_sapiens 0 379
ENST00000461619 CCHCR1-013 retained_intron Homo_sapiens 0 244
ENST00000463211 CCHCR1-012 retained_intron Homo_sapiens 0 392
ENST00000463667 CCHCR1-014 processed_transcript Homo_sapiens 0 318
ENST00000464012 CCHCR1-012 retained_intron Homo_sapiens 0 398
ENST00000465277 CCHCR1-012 retained_intron Homo_sapiens 0 392
ENST00000467553 CCHCR1-013 retained_intron Homo_sapiens 0 244
ENST00000472432 CCHCR1-014 processed_transcript Homo_sapiens 0 324
ENST00000473623 CCHCR1-012 retained_intron Homo_sapiens 0 403
ENST00000473836 CCHCR1-013 retained_intron Homo_sapiens 0 244
ENST00000475620 CCHCR1-012 retained_intron Homo_sapiens 0 392
ENST00000481280 CCHCR1-013 retained_intron Homo_sapiens 0 239
ENST00000485747 CCHCR1-014 processed_transcript Homo_sapiens 0 324
ENST00000486060 CCHCR1-014 retained_intron Homo_sapiens 0 324
ENST00000488698 CCHCR1-014 processed_transcript Homo_sapiens 0 318
ENST00000491355 CCHCR1-014 processed_transcript Homo_sapiens 0 324
ENST00000494515 CCHCR1-013 retained_intron Homo_sapiens 0 239
ENST00000496505 CCHCR1-013 retained_intron Homo_sapiens 0 244
ENST00000498184 CCHCR1-012 retained_intron Homo_sapiens 0 403
ENST00000503420 CCHCR1-026 protein_coding Homo_sapiens 0 296
ENST00000503934 CCHCR1-021 protein_coding Homo_sapiens 0 392
ENST00000507751 CCHCR1-028 protein_coding Homo_sapiens 0 435
ENST00000508683 CCHCR1-020 protein_coding Homo_sapiens 0 381
ENST00000509552 CCHCR1-017 retained_intron Homo_sapiens 0 1511
ENST00000513222 CCHCR1-023 protein_coding Homo_sapiens 0 411
ENST00000610825 CCHCR1-204 protein_coding Homo_sapiens 0 1768
ENST00000611796 CCHCR1-203 protein_coding Homo_sapiens 0 1784
ENST00000613123 CCHCR1-201 protein_coding Homo_sapiens 0 1768
ENST00000622518 CCHCR1-202 protein_coding Homo_sapiens 0 1784

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