C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Vpr (HIV-1) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040325 Vprbp 10090 + 9:106821874-106880992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055009 Vprbp-003 106829069-106880438 protein_coding
  ENSMUST00000159645 Vprbp-001 106821874-106880443 protein_coding
  ENSMUST00000161758 Vprbp-002 106829069-106880992 protein_coding
  ENSMUST00000163657 Vprbp-004 106874256-106880158 protein_coding
  ENSMUST00000188343 Vprbp-007 106850886-106853625 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055009ENSMUST00000159645ENSMUST00000161758
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055009 2.633±0.10 8.951±0.61 3.741±0.44 7.206±1.62 6.944±2.85 N/A 1.864±0.19 2.739±0.37 5.080±2.08 N/A 1.053±0.16 10.236±7.24 22.260±0.00 41.415±14.89
ENSMUST00000159645 6.132±2.95 6.437±0.00 N/A 4.703±0.00 3.853±0.17 9.099±0.86 3.132±0.30 3.634±0.38 4.040±0.77 5.823±0.80 N/A 12.871±2.02 N/A 12.333±0.00
ENSMUST00000161758 N/A N/A 3.550±0.10 3.705±1.12 N/A N/A 1.733±0.24 3.681±1.03 3.439±0.93 3.969±0.46 N/A 5.145±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008180 IEA COP9 signalosome
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030183 IMP B cell differentiation
GO:0033151 IMP V(D)J recombination
GO:0035212 ISS cell competition in a multicellular organism
GO:1990244 ISS histone kinase activity (H2A-T120 specific)
GO:1990245 ISS histone H2A-T120 phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087101 Vpr (HIV-1) binding protein protein_coding Danio_rerio
ENSDARG00000087418 VPRBP Vpr (HIV-1) binding protein protein_coding Danio_rerio
ENSG00000145041 VPRBP Vpr (HIV-1) binding protein protein_coding Homo_sapiens

Loading