C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Vpr (HIV-1) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055009 Vprbp-003 ENSMUSG00000040325 10090 + 9:106829069-106880438 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000055009
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000055009 2.633±0.10 8.951±0.61 3.741±0.44 7.206±1.62 6.944±2.85 1.864±0.19 2.739±0.37 5.080±2.08 1.053±0.16 10.236±7.24 22.260±0.00 41.415±14.89

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030183 IMP B cell differentiation
GO:0033151 IMP V(D)J recombination
GO:0035212 ISS cell competition in a multicellular organism
GO:1990244 ISS histone kinase activity (H2A-T120 specific)
GO:1990245 ISS histone H2A-T120 phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335891 VPRBP-201 protein_coding Homo_sapiens 0 3675
ENST00000423656 VPRBP-001 protein_coding Homo_sapiens 0 6408
ENST00000504652 VPRBP-202 protein_coding Homo_sapiens 0 6396

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