C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Vpr (HIV-1) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145041 VPRBP 9606 - 3:51395867-51500002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000335891 VPRBP-201 51397842-51483838 protein_coding
  ENST00000423656 VPRBP-001 51395867-51499994 protein_coding
  ENST00000504652 VPRBP-202 51395867-51500002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335891ENST00000423656ENST00000504652
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335891 2.413±0.00 2.875±0.00 N/A 3.127±0.00 3.859±0.00 0.993±0.00 N/A 2.054±0.00 3.053±0.00 3.691±0.00 3.303±0.93 2.437±1.21 18.998±7.53
ENST00000423656 3.487±0.00 3.286±0.00 N/A 2.726±1.00 2.323±1.13 1.931±0.00 4.446±0.00 1.388±0.04 1.862±0.95 2.607±0.00 3.049±1.69 1.725±0.02 16.486±0.00
ENST00000504652 N/A N/A 1.026±0.00 N/A N/A 0.207±0.00 0.614±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MV CIL_0005MV_0002 CGP 3:51385047-51397908

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008180 IDA COP9 signalosome
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030183 ISS B cell differentiation
GO:0033151 ISS V(D)J recombination
GO:0035212 IMP cell competition in a multicellular organism
GO:1990244 IDA histone kinase activity (H2A-T120 specific)
GO:1990245 IDA histone H2A-T120 phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087101 Vpr (HIV-1) binding protein protein_coding Danio_rerio
ENSDARG00000087418 VPRBP Vpr (HIV-1) binding protein protein_coding Danio_rerio
ENSMUSG00000040325 Vprbp Vpr (HIV-1) binding protein protein_coding Mus_musculus

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