C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hepatitis A virus cellular receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040405 Havcr1 10090 + 11:46735080-46779578 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047568 Havcr1-002 46751168-46779578 protein_coding
  ENSMUST00000081819 Havcr1-001 46740061-46779578 protein_coding
  ENSMUST00000109223 Havcr1-004 46750511-46779576 protein_coding
  ENSMUST00000109224 Havcr1-003 46735080-46756245 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047568ENSMUST00000081819ENSMUST00000109223ENSMUST00000109224
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047568 N/A 0.027±0.00 0.010±0.00 0.298±0.19 0.052±0.00 5.225±3.92 0.045±0.04 0.129±0.06 0.011±0.00 0.104±0.04 0.720±0.66 0.051±0.02
ENSMUST00000081819 0.027±0.01 N/A 0.009±0.00 0.357±0.02 N/A N/A 0.053±0.03 0.098±0.00 0.134±0.00 0.053±0.00 0.093±0.00 0.086±0.00
ENSMUST00000109223 N/A N/A N/A N/A N/A N/A 0.066±0.00 0.098±0.00 N/A N/A 0.059±0.00 0.112±0.02
ENSMUST00000109224 N/A 0.080±0.00 0.043±0.00 1.573±0.00 N/A N/A 0.040±0.00 N/A N/A 0.276±0.16 N/A 0.088±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000737 CIL_000737_0004 CGP 11:46668960-46779578

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0033005 IDA positive regulation of mast cell activation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040178 havcr1 hepatitis A virus cellular receptor 1 protein_coding Danio_rerio
ENSDARG00000091692 havcr2 hepatitis A virus cellular receptor 2 protein_coding Danio_rerio
ENSG00000113249 HAVCR1 hepatitis A virus cellular receptor 1 protein_coding Homo_sapiens

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