C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000737_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040178-ENSDARG00000091692 CGP 7955 21:28496783-28513954
GeneTranscriptPositionBiotype
ENSDARG00000040178 (havcr1)
hepatitis A virus cellular receptor 1 		ENSDART00000058774 (havcr1-001) 28496783-28504565 protein_coding
ENSDART00000133318 (havcr1-003) 28496953-28504561 protein_coding
ENSDART00000134238 (havcr1-002) 28496970-28504565 protein_coding
ENSDART00000134782 (havcr1-004) 28498034-28504524 protein_coding
ENSDART00000142625 (havcr1-005) 28501383-28504565 retained_intron
ENSDARG00000091692 (havcr2)
hepatitis A virus cellular receptor 2 		ENSDART00000124327 (havcr2-201) 28507148-28512011 protein_coding
ENSDART00000147367 (havcr2-001) 28508376-28513954 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000737_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113249-ENSG00000135077 CGP 9606 5:157029413-157142869
GeneTranscriptPositionBiotype
ENSG00000113249 (HAVCR1)
hepatitis A virus cellular receptor 1 		ENST00000339252 (HAVCR1-003) 157029516-157058476 protein_coding
ENST00000517644 (HAVCR1-005) 157029740-157049149 processed_transcript
ENST00000518745 (HAVCR1-004) 157052365-157058396 protein_coding
ENST00000522693 (HAVCR1-002) 157029413-157059119 protein_coding
ENST00000523175 (HAVCR1-001) 157029426-157058955 protein_coding
ENSG00000135077 (HAVCR2)
hepatitis A virus cellular receptor 2 		ENST00000307851 (HAVCR2-001) 157085832-157109714 protein_coding
ENST00000517358 (HAVCR2-005) 157106654-157107302 processed_transcript
ENST00000521665 (HAVCR2-006) 157095450-157107283 retained_intron
ENST00000522593 (HAVCR2-004) 157087088-157109122 protein_coding
ENST00000522902 (HAVCR2-002) 157106120-157109092 retained_intron
ENST00000524219 (HAVCR2-007) 157095408-157142869 protein_coding
ENSG00000155868 (MED7)
mediator complex subunit 7 		ENST00000286317 (MED7-001) 157137412-157143184 protein_coding
ENST00000420343 (MED7-201) 157138442-157142775 protein_coding
ENST00000524289 (MED7-003) 157138846-157159019 protein_coding
ENSG00000254246 (CTB-120L21.1)
 ENST00000517708 (CTB-120L21.1-001) 157104788-157114900 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000737_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020399-ENSMUSG00000078924 CGP 10090 11:46454935-46538156
GeneTranscriptPositionBiotype
ENSMUSG00000020399 (Havcr2)
hepatitis A virus cellular receptor 2 		ENSMUST00000020668 (Havcr2-001) 46454935-46481255 protein_coding
ENSMUST00000109229 (Havcr2-002) 46454969-46481246 protein_coding
ENSMUSG00000078924 (Gm12169)
predicted gene 12169 		ENSMUST00000109228 (Gm12169-001) 46524212-46538156 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000737_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040413-ENSMUSG00000040405 CGP 10090 11:46668960-46779578
GeneTranscriptPositionBiotype
ENSMUSG00000040405 (Havcr1)
hepatitis A virus cellular receptor 1 		ENSMUST00000047568 (Havcr1-002) 46751168-46779578 protein_coding
ENSMUST00000081819 (Havcr1-001) 46740061-46779578 protein_coding
ENSMUST00000109223 (Havcr1-004) 46750511-46779576 protein_coding
ENSMUST00000109224 (Havcr1-003) 46735080-46756245 protein_coding
ENSMUSG00000040413 (Timd2)
T cell immunoglobulin and mucin domain containing 2 		ENSMUST00000055102 (Timd2-002) 46670009-46707059 protein_coding
ENSMUST00000109225 (Timd2-001) 46670009-46698962 protein_coding
ENSMUST00000125008 (Timd2-003) 46687026-46707061 protein_coding
ENSMUST00000169584 (Timd2-201) 46668960-46690357 protein_coding
ENSMUSG00000080776 (Gm12174)
predicted gene 12174 		ENSMUST00000119853 (Gm12174-001) 46727818-46728630 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000737_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078924-ENSMUSG00000046974 CGP 10090 11:46524212-46589232
GeneTranscriptPositionBiotype
ENSMUSG00000046974 (BC053393)
cDNA sequence BC053393 		ENSMUST00000050937 (BC053393-001) 46571536-46589232 protein_coding
ENSMUSG00000078924 (Gm12169)
predicted gene 12169 		ENSMUST00000109228 (Gm12169-001) 46524212-46538156 protein_coding
ENSMUSG00000081713 (Gm12170)
predicted gene 12170 		ENSMUST00000119281 (Gm12170-001) 46539782-46540081 unprocessed_pseudogene
ENSMUSG00000082749 (Rpl9-ps2)
ribosomal protein L9, pseudogene 2 		ENSMUST00000120821 (Rpl9-ps2-001) 46562031-46562607 processed_pseudogene
ENSMUSG00000086981 (Gm12171)
predicted gene 12171 		ENSMUST00000150895 (Gm12171-001) 46544209-46557067 lincRNA
ENSMUST00000169764 (Gm12171-201) 46548413-46556068 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000737_0001ENSDARG00000040178ENSDART00000058774ENSDART00000133318ENSDART00000134238ENSDART00000134782ENSDART00000142625ENSDARG00000091692ENSDART00000124327ENSDART00000147367CIL_000737_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000135077ENST00000307851ENST00000517358ENST00000521665ENST00000522593ENST00000522902ENST00000524219ENSG00000155868ENST00000286317ENST00000420343ENST00000524289ENSG00000254246ENST00000517708CIL_000737_0003ENSMUSG00000020399ENSMUST00000020668ENSMUST00000109229ENSMUSG00000078924ENSMUST00000109228CIL_000737_0004ENSMUSG00000040405ENSMUST00000047568ENSMUST00000081819ENSMUST00000109223ENSMUST00000109224ENSMUSG00000040413ENSMUST00000055102ENSMUST00000109225ENSMUST00000125008ENSMUST00000169584ENSMUSG00000080776ENSMUST00000119853CIL_000737_0005ENSMUSG00000046974ENSMUST00000050937ENSMUSG00000078924ENSMUST00000109228ENSMUSG00000081713ENSMUST00000119281ENSMUSG00000082749ENSMUST00000120821ENSMUSG00000086981ENSMUST00000150895ENSMUST00000169764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000737_0001ENSDARG00000040178ENSDART00000058774ENSDART00000134238ENSDART00000134782ENSDART00000142625ENSDARG00000091692ENSDART00000124327ENSDART00000147367CIL_000737_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000135077ENST00000307851ENST00000522593ENSG00000155868ENST00000286317ENST00000420343ENST00000524289ENSG00000254246ENST00000517708CIL_000737_0003ENSMUSG00000020399ENSMUST00000020668ENSMUST00000109229ENSMUSG00000078924ENSMUST00000109228CIL_000737_0004ENSMUSG00000040405ENSMUST00000047568ENSMUST00000081819ENSMUST00000109223ENSMUST00000109224ENSMUSG00000040413ENSMUST00000055102ENSMUST00000109225ENSMUST00000125008ENSMUST00000169584ENSMUSG00000080776ENSMUST00000119853CIL_000737_0005ENSMUSG00000046974ENSMUST00000050937ENSMUSG00000078924ENSMUST00000109228ENSMUSG00000081713ENSMUST00000119281ENSMUSG00000082749ENSMUST00000120821ENSMUSG00000086981ENSMUST00000150895
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040178 ENSDART00000058774 N/A N/A N/A 1.848±1.19 N/A N/A 9.600±0.77 8.294±1.03 N/A N/A 1.429±0.00 N/A N/A N/A
ENSDART00000133318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134238 N/A N/A N/A 1.752±0.19 N/A N/A 4.553±1.64 5.851±0.00 0.351±0.00 N/A N/A N/A N/A N/A
ENSDART00000134782 N/A N/A N/A 0.912±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142625 N/A N/A N/A 3.136±1.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091692 ENSDART00000124327 N/A N/A N/A 1.382±1.10 N/A N/A 0.864±0.59 1.628±0.00 N/A N/A 0.350±0.00 N/A N/A N/A
ENSDART00000147367 N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.108±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113249 ENST00000339252 0.012±0.00 0.027±0.00 0.282±0.00 0.026±0.00 0.010±0.00 N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517644 N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518745 0.066±0.00 0.117±0.00 N/A 0.129±0.00 0.147±0.00 0.102±0.00 0.092±0.00 N/A N/A 0.050±0.00 0.124±0.00 N/A N/A 0.654±0.59
ENST00000522693 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523175 N/A N/A 0.221±0.00 0.053±0.00 0.554±0.00 N/A 0.030±0.00 N/A 0.194±0.00 N/A N/A 0.025±0.00 N/A N/A
ENSG00000135077 ENST00000307851 N/A 4.265±0.00 N/A N/A N/A N/A 0.465±0.00 N/A N/A 3.109±0.00 N/A 1.495±0.00 N/A N/A
ENST00000517358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.643±0.00 N/A
ENST00000522902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155868 ENST00000286317 1.480±0.00 N/A 0.887±0.00 1.946±0.06 1.524±0.00 1.954±0.00 0.680±0.00 1.909±0.34 0.398±0.00 3.179±0.00 1.913±0.00 N/A N/A N/A
ENST00000420343 3.298±0.00 N/A 2.038±0.00 2.129±0.81 4.094±0.00 1.599±0.00 2.653±0.00 5.873±0.00 2.212±0.00 N/A 0.574±0.00 3.740±0.60 4.944±1.40 14.968±1.43
ENST00000524289 N/A N/A 2.375±0.00 1.241±0.00 N/A 1.506±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254246 ENST00000517708 N/A 0.058±0.00 N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020399 ENSMUST00000020668 0.152±0.07 0.172±0.12 0.181±0.01 0.151±0.14 0.478±0.24 0.384±0.02 0.046±0.03 0.142±0.03 0.107±0.06 1.411±0.26 0.131±0.00 0.439±0.18 0.682±0.53 0.077±0.00
ENSMUST00000109229 0.146±0.10 0.274±0.02 N/A 1.011±0.00 0.393±0.29 0.311±0.05 0.011±0.00 0.110±0.00 0.035±0.01 0.259±0.00 0.033±0.02 0.280±0.18 1.545±0.76 0.073±0.05
ENSMUSG00000078924 ENSMUST00000109228 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.324±0.00 0.036±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040405 ENSMUST00000047568 N/A N/A 0.027±0.00 0.010±0.00 0.298±0.19 0.052±0.00 N/A 5.225±3.92 0.045±0.04 0.129±0.06 0.011±0.00 0.104±0.04 0.720±0.66 0.051±0.02
ENSMUST00000081819 0.027±0.01 N/A N/A 0.009±0.00 0.357±0.02 N/A N/A N/A 0.053±0.03 0.098±0.00 0.134±0.00 0.053±0.00 0.093±0.00 0.086±0.00
ENSMUST00000109223 N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 0.098±0.00 N/A N/A 0.059±0.00 0.112±0.02
ENSMUST00000109224 N/A N/A 0.080±0.00 0.043±0.00 1.573±0.00 N/A N/A N/A 0.040±0.00 N/A N/A 0.276±0.16 N/A 0.088±0.02
ENSMUSG00000040413 ENSMUST00000055102 0.205±0.00 N/A 0.004±0.00 0.006±0.00 0.273±0.11 N/A N/A 1.636±0.95 17.418±15.78 N/A 0.017±0.00 0.259±0.16 5.346±5.22 0.026±0.01
ENSMUST00000109225 N/A N/A N/A 0.006±0.00 N/A N/A N/A 1.084±0.34 3.882±2.51 N/A N/A N/A 4.442±2.91 N/A
ENSMUST00000125008 N/A N/A N/A 0.043±0.00 0.200±0.07 0.416±0.26 N/A 2.542±0.36 27.193±14.84 N/A N/A 0.274±0.19 36.885±0.00 0.099±0.00
ENSMUST00000169584 N/A N/A N/A N/A N/A N/A N/A 0.277±0.00 N/A N/A N/A 0.090±0.00 0.017±0.00 N/A
ENSMUSG00000080776 ENSMUST00000119853 8.236±2.31 0.887±0.23 14.764±3.49 6.952±7.72 4.464±1.58 1.949±0.39 2.041±0.91 2.330±0.59 8.715±11.64 2.611±0.59 0.276±0.15 6.377±6.00 1.465±1.94 0.795±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046974 ENSMUST00000050937 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.008±0.01 0.066±0.03 N/A N/A 0.221±0.20 N/A
ENSMUSG00000078924 ENSMUST00000109228 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.324±0.00 0.036±0.01 N/A
ENSMUSG00000081713 ENSMUST00000119281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.810±0.11 N/A N/A
ENSMUSG00000082749 ENSMUST00000120821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A
ENSMUSG00000086981 ENSMUST00000150895 N/A N/A N/A 0.006±0.00 N/A N/A N/A N/A N/A 0.127±0.10 N/A 0.104±0.07 0.014±0.01 N/A
ENSMUST00000169764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading