C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000737_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040178-ENSDARG00000091692 CGP 7955 21:28496783-28513954
GeneTranscriptPositionBiotype
ENSDARG00000040178 (havcr1)
hepatitis A virus cellular receptor 1 		ENSDART00000058774 (havcr1-001) 28496783-28504565 protein_coding
ENSDART00000133318 (havcr1-003) 28496953-28504561 protein_coding
ENSDART00000134238 (havcr1-002) 28496970-28504565 protein_coding
ENSDART00000134782 (havcr1-004) 28498034-28504524 protein_coding
ENSDART00000142625 (havcr1-005) 28501383-28504565 retained_intron
ENSDARG00000091692 (havcr2)
hepatitis A virus cellular receptor 2 		ENSDART00000124327 (havcr2-201) 28507148-28512011 protein_coding
ENSDART00000147367 (havcr2-001) 28508376-28513954 protein_coding
CIL_000737_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113249-ENSG00000135077 CGP 9606 5:157029413-157142869
GeneTranscriptPositionBiotype
ENSG00000113249 (HAVCR1)
hepatitis A virus cellular receptor 1 		ENST00000339252 (HAVCR1-003) 157029516-157058476 protein_coding
ENST00000517644 (HAVCR1-005) 157029740-157049149 processed_transcript
ENST00000518745 (HAVCR1-004) 157052365-157058396 protein_coding
ENST00000522693 (HAVCR1-002) 157029413-157059119 protein_coding
ENST00000523175 (HAVCR1-001) 157029426-157058955 protein_coding
ENSG00000135077 (HAVCR2)
hepatitis A virus cellular receptor 2 		ENST00000307851 (HAVCR2-001) 157085832-157109714 protein_coding
ENST00000517358 (HAVCR2-005) 157106654-157107302 processed_transcript
ENST00000521665 (HAVCR2-006) 157095450-157107283 retained_intron
ENST00000522593 (HAVCR2-004) 157087088-157109122 protein_coding
ENST00000522902 (HAVCR2-002) 157106120-157109092 retained_intron
ENST00000524219 (HAVCR2-007) 157095408-157142869 protein_coding
ENSG00000155868 (MED7)
mediator complex subunit 7 		ENST00000286317 (MED7-001) 157137412-157143184 protein_coding
ENST00000420343 (MED7-201) 157138442-157142775 protein_coding
ENST00000524289 (MED7-003) 157138846-157159019 protein_coding
ENSG00000254246 (CTB-120L21.1)
 ENST00000517708 (CTB-120L21.1-001) 157104788-157114900 antisense
CIL_000737_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020399-ENSMUSG00000078924 CGP 10090 11:46454935-46538156
GeneTranscriptPositionBiotype
ENSMUSG00000020399 (Havcr2)
hepatitis A virus cellular receptor 2 		ENSMUST00000020668 (Havcr2-001) 46454935-46481255 protein_coding
ENSMUST00000109229 (Havcr2-002) 46454969-46481246 protein_coding
ENSMUSG00000078924 (Gm12169)
predicted gene 12169 		ENSMUST00000109228 (Gm12169-001) 46524212-46538156 protein_coding
CIL_000737_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040413-ENSMUSG00000040405 CGP 10090 11:46668960-46779578
GeneTranscriptPositionBiotype
ENSMUSG00000040405 (Havcr1)
hepatitis A virus cellular receptor 1 		ENSMUST00000047568 (Havcr1-002) 46751168-46779578 protein_coding
ENSMUST00000081819 (Havcr1-001) 46740061-46779578 protein_coding
ENSMUST00000109223 (Havcr1-004) 46750511-46779576 protein_coding
ENSMUST00000109224 (Havcr1-003) 46735080-46756245 protein_coding
ENSMUSG00000040413 (Timd2)
T cell immunoglobulin and mucin domain containing 2 		ENSMUST00000055102 (Timd2-002) 46670009-46707059 protein_coding
ENSMUST00000109225 (Timd2-001) 46670009-46698962 protein_coding
ENSMUST00000125008 (Timd2-003) 46687026-46707061 protein_coding
ENSMUST00000169584 (Timd2-201) 46668960-46690357 protein_coding
ENSMUSG00000080776 (Gm12174)
predicted gene 12174 		ENSMUST00000119853 (Gm12174-001) 46727818-46728630 processed_pseudogene
CIL_000737_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078924-ENSMUSG00000046974 CGP 10090 11:46524212-46589232
GeneTranscriptPositionBiotype
ENSMUSG00000046974 (BC053393)
cDNA sequence BC053393 		ENSMUST00000050937 (BC053393-001) 46571536-46589232 protein_coding
ENSMUSG00000078924 (Gm12169)
predicted gene 12169 		ENSMUST00000109228 (Gm12169-001) 46524212-46538156 protein_coding
ENSMUSG00000081713 (Gm12170)
predicted gene 12170 		ENSMUST00000119281 (Gm12170-001) 46539782-46540081 unprocessed_pseudogene
ENSMUSG00000082749 (Rpl9-ps2)
ribosomal protein L9, pseudogene 2 		ENSMUST00000120821 (Rpl9-ps2-001) 46562031-46562607 processed_pseudogene
ENSMUSG00000086981 (Gm12171)
predicted gene 12171 		ENSMUST00000150895 (Gm12171-001) 46544209-46557067 lincRNA
ENSMUST00000169764 (Gm12171-201) 46548413-46556068 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000737_0001ENSDARG00000040178ENSDART00000058774ENSDART00000133318ENSDART00000134238ENSDART00000134782ENSDART00000142625ENSDARG00000091692ENSDART00000124327ENSDART00000147367CIL_000737_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000135077ENST00000307851ENST00000517358ENST00000521665ENST00000522593ENST00000522902ENST00000524219ENSG00000155868ENST00000286317ENST00000420343ENST00000524289ENSG00000254246ENST00000517708CIL_000737_0003ENSMUSG00000020399ENSMUST00000020668ENSMUST00000109229ENSMUSG00000078924ENSMUST00000109228CIL_000737_0004ENSMUSG00000040405ENSMUST00000047568ENSMUST00000081819ENSMUST00000109223ENSMUST00000109224ENSMUSG00000040413ENSMUST00000055102ENSMUST00000109225ENSMUST00000125008ENSMUST00000169584ENSMUSG00000080776ENSMUST00000119853CIL_000737_0005ENSMUSG00000046974ENSMUST00000050937ENSMUSG00000078924ENSMUST00000109228ENSMUSG00000081713ENSMUST00000119281ENSMUSG00000082749ENSMUST00000120821ENSMUSG00000086981ENSMUST00000150895ENSMUST00000169764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000737_0001ENSDARG00000040178ENSDART00000058774ENSDART00000134238ENSDART00000134782ENSDART00000142625ENSDARG00000091692ENSDART00000124327ENSDART00000147367CIL_000737_0002ENSG00000113249ENST00000339252ENST00000517644ENST00000518745ENST00000522693ENST00000523175ENSG00000135077ENST00000307851ENST00000522593ENSG00000155868ENST00000286317ENST00000420343ENST00000524289ENSG00000254246ENST00000517708CIL_000737_0003ENSMUSG00000020399ENSMUST00000020668ENSMUST00000109229ENSMUSG00000078924ENSMUST00000109228CIL_000737_0004ENSMUSG00000040405ENSMUST00000047568ENSMUST00000081819ENSMUST00000109223ENSMUST00000109224ENSMUSG00000040413ENSMUST00000055102ENSMUST00000109225ENSMUST00000125008ENSMUST00000169584ENSMUSG00000080776ENSMUST00000119853CIL_000737_0005ENSMUSG00000046974ENSMUST00000050937ENSMUSG00000078924ENSMUST00000109228ENSMUSG00000081713ENSMUST00000119281ENSMUSG00000082749ENSMUST00000120821ENSMUSG00000086981ENSMUST00000150895
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040178 ENSDART00000058774 N/A N/A N/A 1.848±1.19 N/A N/A 9.600±0.77 8.294±1.03 N/A N/A 1.429±0.00 N/A N/A N/A
ENSDART00000133318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134238 N/A N/A N/A 1.752±0.19 N/A N/A 4.553±1.64 5.851±0.00 0.351±0.00 N/A N/A N/A N/A N/A
ENSDART00000134782 N/A N/A N/A 0.912±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142625 N/A N/A N/A 3.136±1.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091692 ENSDART00000124327 N/A N/A N/A 1.382±1.10 N/A N/A 0.864±0.59 1.628±0.00 N/A N/A 0.350±0.00 N/A N/A N/A
ENSDART00000147367 N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.108±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113249 ENST00000339252 0.012±0.00 0.027±0.00 0.282±0.00 0.026±0.00 0.010±0.00 N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000517644 N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518745 0.066±0.00 0.117±0.00 N/A 0.129±0.00 0.147±0.00 0.102±0.00 0.092±0.00 N/A N/A 0.050±0.00 0.124±0.00 N/A N/A 0.654±0.59
ENST00000522693 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523175 N/A N/A 0.221±0.00 0.053±0.00 0.554±0.00 N/A 0.030±0.00 N/A 0.194±0.00 N/A N/A 0.025±0.00 N/A N/A
ENSG00000135077 ENST00000307851 N/A 4.265±0.00 N/A N/A N/A N/A 0.465±0.00 N/A N/A 3.109±0.00 N/A 1.495±0.00 N/A N/A
ENST00000517358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.643±0.00 N/A
ENST00000522902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155868 ENST00000286317 1.480±0.00 N/A 0.887±0.00 1.946±0.06 1.524±0.00 1.954±0.00 0.680±0.00 1.909±0.34 0.398±0.00 3.179±0.00 1.913±0.00 N/A N/A N/A
ENST00000420343 3.298±0.00 N/A 2.038±0.00 2.129±0.81 4.094±0.00 1.599±0.00 2.653±0.00 5.873±0.00 2.212±0.00 N/A 0.574±0.00 3.740±0.60 4.944±1.40 14.968±1.43
ENST00000524289 N/A N/A 2.375±0.00 1.241±0.00 N/A 1.506±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254246 ENST00000517708 N/A 0.058±0.00 N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020399 ENSMUST00000020668 0.152±0.07 0.172±0.12 0.181±0.01 0.151±0.14 0.478±0.24 0.384±0.02 0.046±0.03 0.142±0.03 0.107±0.06 1.411±0.26 0.131±0.00 0.439±0.18 0.682±0.53 0.077±0.00
ENSMUST00000109229 0.146±0.10 0.274±0.02 N/A 1.011±0.00 0.393±0.29 0.311±0.05 0.011±0.00 0.110±0.00 0.035±0.01 0.259±0.00 0.033±0.02 0.280±0.18 1.545±0.76 0.073±0.05
ENSMUSG00000078924 ENSMUST00000109228 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.324±0.00 0.036±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040405 ENSMUST00000047568 N/A N/A 0.027±0.00 0.010±0.00 0.298±0.19 0.052±0.00 N/A 5.225±3.92 0.045±0.04 0.129±0.06 0.011±0.00 0.104±0.04 0.720±0.66 0.051±0.02
ENSMUST00000081819 0.027±0.01 N/A N/A 0.009±0.00 0.357±0.02 N/A N/A N/A 0.053±0.03 0.098±0.00 0.134±0.00 0.053±0.00 0.093±0.00 0.086±0.00
ENSMUST00000109223 N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 0.098±0.00 N/A N/A 0.059±0.00 0.112±0.02
ENSMUST00000109224 N/A N/A 0.080±0.00 0.043±0.00 1.573±0.00 N/A N/A N/A 0.040±0.00 N/A N/A 0.276±0.16 N/A 0.088±0.02
ENSMUSG00000040413 ENSMUST00000055102 0.205±0.00 N/A 0.004±0.00 0.006±0.00 0.273±0.11 N/A N/A 1.636±0.95 17.418±15.78 N/A 0.017±0.00 0.259±0.16 5.346±5.22 0.026±0.01
ENSMUST00000109225 N/A N/A N/A 0.006±0.00 N/A N/A N/A 1.084±0.34 3.882±2.51 N/A N/A N/A 4.442±2.91 N/A
ENSMUST00000125008 N/A N/A N/A 0.043±0.00 0.200±0.07 0.416±0.26 N/A 2.542±0.36 27.193±14.84 N/A N/A 0.274±0.19 36.885±0.00 0.099±0.00
ENSMUST00000169584 N/A N/A N/A N/A N/A N/A N/A 0.277±0.00 N/A N/A N/A 0.090±0.00 0.017±0.00 N/A
ENSMUSG00000080776 ENSMUST00000119853 8.236±2.31 0.887±0.23 14.764±3.49 6.952±7.72 4.464±1.58 1.949±0.39 2.041±0.91 2.330±0.59 8.715±11.64 2.611±0.59 0.276±0.15 6.377±6.00 1.465±1.94 0.795±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046974 ENSMUST00000050937 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.008±0.01 0.066±0.03 N/A N/A 0.221±0.20 N/A
ENSMUSG00000078924 ENSMUST00000109228 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.324±0.00 0.036±0.01 N/A
ENSMUSG00000081713 ENSMUST00000119281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.810±0.11 N/A N/A
ENSMUSG00000082749 ENSMUST00000120821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A
ENSMUSG00000086981 ENSMUST00000150895 N/A N/A N/A 0.006±0.00 N/A N/A N/A N/A N/A 0.127±0.10 N/A 0.104±0.07 0.014±0.01 N/A
ENSMUST00000169764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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