C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RING CCCH (C3H) domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161609 Rc3h1-001 ENSMUSG00000040423 10090 + 1:160906418-160974978 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161609 3.901±0.74 3.288±0.80 4.091±0.58 3.277±1.31 3.943±0.87 3.279±0.86 2.400±0.21 2.324±0.63 2.500±0.64 4.731±0.21 2.450±0.58 4.850±1.06 3.651±1.16 2.196±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CR CIL_0005CR_0002 CGP 1:160906418-161003010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0001782 IGI B cell homeostasis
GO:0002634 IMP regulation of germinal center formation
GO:0002635 IMP negative regulation of germinal center formation
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IDA regulation of gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0010608 IMP posttranscriptional regulation of gene expression
GO:0030889 IMP negative regulation of B cell proliferation
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0045623 IMP negative regulation of T-helper cell differentiation
GO:0046007 IMP negative regulation of activated T cell proliferation
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0050856 IMP regulation of T cell receptor signaling pathway
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258349 RC3H1-201 protein_coding Homo_sapiens 0 5090
ENST00000367694 RC3H1-001 protein_coding Homo_sapiens 0 4734
ENST00000367696 RC3H1-003 protein_coding Homo_sapiens 0 5476
ENST00000479099 RC3H1-005 retained_intron Homo_sapiens 0 459
ENST00000484867 RC3H1-002 retained_intron Homo_sapiens 0 316
ENST00000531594 RC3H1-004 retained_intron Homo_sapiens 0 281

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