C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RING CCCH (C3H) domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035911 Rc3h1-002 ENSMUSG00000040423 10090 + 1:160930024-160967817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000035911
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000035911 5.693±1.44 6.235±1.05 2.061±0.00 8.735±1.48 6.168±0.86 2.931±0.80 4.143±1.18 2.438±0.34 5.402±2.40 7.434±3.37 4.462±1.31 14.350±3.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CR CIL_0005CR_0002 CGP 1:160906418-161003010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IGI B cell homeostasis
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IDA regulation of gene expression
GO:0010608 IDA posttranscriptional regulation of gene expression
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0045623 IMP negative regulation of T-helper cell differentiation
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258349 RC3H1-201 protein_coding Homo_sapiens 0 4340
ENST00000367694 RC3H1-001 protein_coding Homo_sapiens 0 4494
ENST00000367696 RC3H1-003 protein_coding Homo_sapiens 0 4349
ENST00000479099 RC3H1-005 retained_intron Homo_sapiens 0 340
ENST00000484867 RC3H1-002 retained_intron Homo_sapiens 0 316
ENST00000531594 RC3H1-004 retained_intron Homo_sapiens 0 281

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