C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain PHD finger transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040481 Bptf 10090 - 11:107033081-107132127 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057892 Bptf-201 107033081-107131922 protein_coding
  ENSMUST00000106762 Bptf-002 107033083-107132127 protein_coding
  ENSMUST00000106763 Bptf-001 107033083-107132127 protein_coding
  ENSMUST00000133317 Bptf-004 107046666-107052890 protein_coding
  ENSMUST00000138443 Bptf-005 107043041-107047275 processed_transcript
  ENSMUST00000147816 Bptf-006 107035504-107043706 processed_transcript
  ENSMUST00000149486 Bptf-003 107060548-107067205 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057892ENSMUST00000106763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057892 4.704±1.82 5.668±1.78 4.880±1.60 5.203±1.93 4.018±1.47 4.457±2.10 1.157±0.34 3.370±1.25 1.512±0.71 5.411±1.96 0.916±0.25 5.945±2.41 3.542±1.11 3.100±1.20
ENSMUST00000106763 1.344±0.64 N/A N/A 2.506±1.13 N/A N/A 0.458±0.00 N/A N/A 1.441±0.00 0.856±0.26 1.104±0.35 1.291±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KI CIL_0000KI_0002 CGP 11:106988629-107132127

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001892 IMP embryonic placenta development
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0007492 IMP endoderm development
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008134 IEA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0009952 IMP anterior/posterior pattern specification
GO:0015630 IEA microtubule cytoskeleton
GO:0016589 IEA NURF complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077361 bptf bromodomain PHD finger transcription factor protein_coding Danio_rerio
ENSG00000171634 BPTF bromodomain PHD finger transcription factor protein_coding Homo_sapiens

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