C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain PHD finger transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171634 BPTF 9606 + 17:67825524-67984378 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306378 BPTF-002 67825665-67983153 protein_coding
  ENST00000321892 BPTF-201 67825664-67984378 protein_coding
  ENST00000335221 BPTF-202 67826112-67903882 protein_coding
  ENST00000342579 BPTF-006 67944230-67984378 protein_coding
  ENST00000424123 BPTF-001 67826142-67982288 protein_coding
  ENST00000467104 BPTF-013 67893221-67894078 retained_intron
  ENST00000544491 BPTF-011 67874920-67891962 protein_coding
  ENST00000544778 BPTF-009 67825524-67945891 protein_coding
  ENST00000577770 BPTF-014 67936609-67944333 processed_transcript
  ENST00000577837 BPTF-018 67975802-67982569 protein_coding
  ENST00000578307 BPTF-007 67965023-67982551 retained_intron
  ENST00000579173 BPTF-012 67891452-67893556 retained_intron
  ENST00000580465 BPTF-005 67940563-67960377 protein_coding
  ENST00000581258 BPTF-004 67947754-67981762 protein_coding
  ENST00000582406 BPTF-016 67944270-67945571 processed_transcript
  ENST00000582467 BPTF-010 67920100-67940545 protein_coding
  ENST00000583990 BPTF-017 67964344-67982569 protein_coding
  ENST00000584931 BPTF-015 67940528-67944591 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306378ENST00000321892ENST00000335221ENST00000342579ENST00000424123ENST00000544778ENST00000581258
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306378 2.468±0.00 1.977±0.00 1.127±0.00 2.892±0.00 3.314±0.31 3.259±0.79 2.326±0.00 1.810±1.36 2.288±1.06 2.008±0.39 1.391±0.36 2.686±0.61 2.259±1.11 7.110±0.14
ENST00000321892 N/A N/A 1.216±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A
ENST00000335221 N/A N/A N/A N/A 8.700±0.00 7.732±0.00 N/A 1.744±0.00 8.275±0.00 7.434±0.00 N/A 6.807±0.00 N/A N/A
ENST00000342579 1.815±0.00 2.172±0.00 N/A 2.587±0.58 2.517±0.00 2.525±0.00 N/A 2.566±0.63 0.923±0.00 1.737±0.00 1.159±0.00 3.647±0.87 1.943±0.00 5.633±0.00
ENST00000424123 N/A N/A 1.494±0.00 2.449±0.53 N/A 0.796±0.00 0.800±0.19 1.394±0.00 N/A N/A 0.646±0.00 2.193±0.99 1.764±1.16 3.212±0.00
ENST00000544778 1.188±0.00 N/A N/A N/A N/A 1.985±0.00 0.837±0.00 0.572±0.00 N/A N/A N/A 1.359±0.00 2.359±0.00 5.062±0.00
ENST00000581258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.121±0.00 7.584±0.00 9.050±0.00 16.948±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001892 IEA embryonic placenta development
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006338 IDA chromatin remodeling
GO:0006351 IMP transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0007420 IMP brain development
GO:0007492 IEA endoderm development
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008134 IDA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0015630 IDA microtubule cytoskeleton
GO:0016589 IDA NURF complex
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IMP positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077361 bptf bromodomain PHD finger transcription factor protein_coding Danio_rerio
ENSMUSG00000040481 Bptf bromodomain PHD finger transcription factor protein_coding Mus_musculus

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