C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal modification protein rimK-like family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146274 Rimklb-002 ENSMUSG00000040649 10090 - 6:122447296-122466587 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000146274
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000146274 0.134±0.01 0.053±0.00 0.020±0.01 0.070±0.00 0.041±0.00 0.055±0.00 0.068±0.02 9.660±0.00 47.590±2.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0046872 IEA metal ion binding
GO:0072590 IDA N-acetyl-L-aspartate-L-glutamate ligase activity
GO:0072591 IDA citrate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299673 RIMKLB-002 processed_transcript Homo_sapiens 0 924
ENST00000544257 RIMKLB-003 nonsense_mediated_decay Homo_sapiens 0 1160
ENST00000619374 RIMKLB-202 protein_coding Homo_sapiens 0 1160

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