C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal modification protein rimK-like family member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068242 Rimklb-001 ENSMUSG00000040649 10090 - 6:122453101-122486313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068242 0.126±0.14 0.080±0.03 0.069±0.00 11.118±10.22 0.165±0.06 0.023±0.00 0.024±0.01 0.067±0.01 0.027±0.01 0.171±0.03 0.032±0.02 3.276±1.71 1.017±0.64 14.117±3.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006464 IEA cellular protein modification process
GO:0046872 IEA metal ion binding
GO:0072590 IDA N-acetyl-L-aspartate-L-glutamate ligase activity
GO:0072591 IDA citrate-L-glutamate ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299673 RIMKLB-002 processed_transcript Homo_sapiens 0 1096
ENST00000357529 RIMKLB-201 protein_coding Homo_sapiens 0 1908
ENST00000408914 RIMKLBP1-001 processed_pseudogene Homo_sapiens 0 1408
ENST00000535829 RIMKLB-001 protein_coding Homo_sapiens 0 1714
ENST00000537189 RIMKLB-009 protein_coding Homo_sapiens 0 448
ENST00000538135 RIMKLB-004 protein_coding Homo_sapiens 0 1908
ENST00000538758 RIMKLB-011 retained_intron Homo_sapiens 0 248
ENST00000539923 RIMKLB-008 protein_coding Homo_sapiens 0 387
ENST00000541044 RIMKLB-007 protein_coding Homo_sapiens 0 466
ENST00000544257 RIMKLB-003 nonsense_mediated_decay Homo_sapiens 0 1096
ENST00000619374 RIMKLB-202 protein_coding Homo_sapiens 0 1096

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