C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 41 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072961 Vps41-201 ENSMUSG00000041236 10090 + 13:18717292-18866809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072961 15.088±2.39 9.933±2.89 19.852±2.16 33.128±9.79 10.297±2.17 6.960±2.00 6.470±1.28 12.059±3.02 7.496±1.83 9.671±1.34 12.105±0.49 16.636±6.21 17.409±1.71 4.956±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JU CIL_0007JU_0003 UCNEbase 13:18085487-18744399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005798 IEA Golgi-associated vesicle
GO:0005829 IEA cytosol
GO:0006886 IEA intracellular protein transport
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 IEA membrane
GO:0030897 IEA HOPS complex
GO:0048193 IEA Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265745 VPS41-010 nonsense_mediated_decay Homo_sapiens 0 815
ENST00000310301 VPS41-001 protein_coding Homo_sapiens 0 3437
ENST00000395969 VPS41-002 protein_coding Homo_sapiens 0 2985
ENST00000413141 VPS41-012 protein_coding Homo_sapiens 0 658
ENST00000414632 VPS41-003 protein_coding Homo_sapiens 0 737
ENST00000418457 VPS41-014 protein_coding Homo_sapiens 0 603
ENST00000439468 VPS41-006 protein_coding Homo_sapiens 0 381
ENST00000448833 VPS41-004 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000457055 VPS41-013 protein_coding Homo_sapiens 0 490
ENST00000462429 VPS41-008 retained_intron Homo_sapiens 0 307
ENST00000466017 VPS41-011 processed_transcript Homo_sapiens 0 684
ENST00000482217 VPS41-007 retained_intron Homo_sapiens 0 752
ENST00000490924 VPS41-005 retained_intron Homo_sapiens 0 213

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