C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma binding protein 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041238 Rbbp8 10090 + 18:11633276-11743207 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047322 Rbbp8-201 11657349-11743207 protein_coding
  ENSMUST00000115861 Rbbp8-202 11633276-11743207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047322ENSMUST00000115861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047322 1.801±0.54 0.855±0.31 1.354±0.65 2.034±0.69 1.045±0.46 1.031±0.33 0.393±0.04 1.177±0.29 1.928±1.67 1.052±0.14 0.287±0.07 1.944±2.28 8.232±4.44 4.356±0.77
ENSMUST00000115861 N/A N/A 1.751±0.24 N/A 0.564±0.22 N/A N/A 0.435±0.15 N/A 0.232±0.00 N/A 1.215±0.74 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NS CIL_0005NS_0002 CGP 18:11633276-11945627

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000014 IEA single-stranded DNA endodeoxyribonuclease activity
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001106 IEA RNA polymerase II transcription corepressor activity
GO:0001835 IMP blastocyst hatching
GO:0003684 IEA damaged DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0007067 IEA mitotic nuclear division
GO:0010792 IEA DNA double-strand break processing involved in repair via single-strand annealing
GO:0017053 IEA transcriptional repressor complex
GO:0031572 ISS G2 DNA damage checkpoint
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043480 rbbp8 retinoblastoma binding protein 8 protein_coding Danio_rerio
ENSG00000101773 RBBP8 retinoblastoma binding protein 8 protein_coding Homo_sapiens

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