C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thymocyte selection-associated high mobility group box
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041272 Tox 10090 - 4:6686353-6991557 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039987 Tox-001 6686353-6990799 protein_coding
  ENSMUST00000125974 Tox-003 6688046-6689351 processed_transcript
  ENSMUST00000147657 Tox-002 6740230-6991557 retained_intron
  ENSMUST00000150082 Tox-004 6820694-6990483 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039987ENSMUST00000125974ENSMUST00000147657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039987 1.062±0.67 1.013±0.42 0.186±0.04 6.130±4.06 3.857±0.94 3.286±2.68 0.201±0.00 0.635±0.11 1.172±1.21 0.878±0.28 0.020±0.01 2.274±0.92 0.048±0.02 1.268±0.33
ENSMUST00000125974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A 3.251±0.51
ENSMUST00000147657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SZ CIL_0001SZ_0002 CGP 4:6396207-6991557
CIL_0008PQ CIL_0008PQ_0002 VISTA 4:6445236-7047592
CIL_00092W CIL_00092W_0002 VISTA 4:6612470-7214779
CIL_0003G3 CIL_0003G3_0002 CGP 4:6686353-8239041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032317 tox thymocyte selection-associated high mobility group box protein_coding Danio_rerio
ENSG00000198846 TOX thymocyte selection-associated high mobility group box protein_coding Homo_sapiens

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