C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: katanin p60 subunit A-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041298 Katnal1 10090 - 5:148874332-148995223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047257 Katnal1-001 148874332-148928647 protein_coding
  ENSMUST00000110508 Katnal1-002 148885726-148929000 processed_transcript
  ENSMUST00000110509 Katnal1-003 148893699-148929320 protein_coding
  ENSMUST00000134031 Katnal1-008 148980438-148981093 processed_transcript
  ENSMUST00000139269 Katnal1-006 148875683-148879079 processed_transcript
  ENSMUST00000145042 Katnal1-009 148990056-148995223 processed_transcript
  ENSMUST00000147473 Katnal1-007 148893775-148995147 protein_coding
  ENSMUST00000149169 Katnal1-005 148904593-148928628 protein_coding
  ENSMUST00000152360 Katnal1-004 148924621-148928665 processed_transcript
  ENSMUST00000152575 Katnal1-010 148991082-148995215 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047257ENSMUST00000110508ENSMUST00000110509ENSMUST00000145042ENSMUST00000147473ENSMUST00000149169ENSMUST00000152575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047257 1.571±0.20 0.727±0.04 1.738±0.00 8.608±4.56 0.938±0.28 0.566±0.12 1.751±0.41 2.157±1.10 1.400±0.97 0.942±0.19 1.034±0.21 2.090±0.99 1.281±0.29 15.023±0.73
ENSMUST00000110508 N/A N/A N/A N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000110509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.462±0.00
ENSMUST00000145042 N/A 0.727±0.04 2.080±0.05 N/A N/A 0.641±0.00 0.367±0.00 1.319±0.00 0.461±0.20 N/A 0.442±0.00 1.232±0.14 0.410±0.00 N/A
ENSMUST00000147473 N/A N/A N/A 101.780±0.00 N/A N/A N/A N/A N/A N/A N/A 31.804±0.00 16.680±0.58 249.922±0.00
ENSMUST00000149169 N/A N/A N/A N/A 3.571±0.00 N/A N/A N/A N/A N/A N/A 6.237±0.27 N/A N/A
ENSMUST00000152575 1.101±0.00 1.437±0.07 N/A N/A 1.820±0.00 0.798±0.25 N/A N/A 0.569±0.28 1.479±0.00 0.859±0.17 2.206±0.17 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003E1 CIL_0003E1_0002 CGP 5:148504631-148995223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006200 IDA:IEA ATP catabolic process
GO:0007283 IMP spermatogenesis
GO:0008017 IEA microtubule binding
GO:0008568 IDA microtubule-severing ATPase activity
GO:0015630 IDA microtubule cytoskeleton
GO:0051013 IDA microtubule severing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000102781 KATNAL1 katanin p60 subunit A-like 1 protein_coding Homo_sapiens

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