C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003E1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122042-ENSG00000102781 CGP 9606 13:29764371-30307484
GeneTranscriptPositionBiotype
ENSG00000102781 (KATNAL1)
katanin p60 subunit A-like 1 		ENST00000380615 (KATNAL1-001) 30202630-30307484 protein_coding
ENST00000380617 (KATNAL1-002) 30208480-30307026 protein_coding
ENST00000414289 (KATNAL1-004) 30255480-30306856 protein_coding
ENST00000441394 (KATNAL1-003) 30255488-30307044 protein_coding
ENST00000480854 (KATNAL1-005) 30208725-30210664 retained_intron
ENSG00000122042 (UBL3)
ubiquitin-like 3 		ENST00000380680 (UBL3-001) 29764371-29850684 protein_coding
ENSG00000122043 (LINC00544)
long intergenic non-protein coding RNA 544 		ENST00000400540 (LINC00544-001) 29935905-29950488 lincRNA
ENST00000481738 (LINC00544-002) 29937906-29942567 lincRNA
ENSG00000215049 (PRDX2P1)
peroxiredoxin 2 pseudogene 1 		ENST00000450181 (PRDX2P1-001) 30296147-30296735 processed_pseudogene
ENSG00000224405 (LINC00572)
long intergenic non-protein coding RNA 572 		ENST00000450264 (LINC00572-001) 29918647-29926651 antisense
ENSG00000224511 (LINC00365)
long intergenic non-protein coding RNA 365 		ENST00000413591 (LINC00365-002) 30103178-30108868 lincRNA
ENST00000432770 (LINC00365-001) 30107599-30108875 lincRNA
ENSG00000232117 (LINC00384)
long intergenic non-protein coding RNA 384 		ENST00000437721 (LINC00384-001) 30151886-30159621 lincRNA
ENSG00000232643 (LINC00385)
long intergenic non-protein coding RNA 385 		ENST00000435044 (LINC00385-001) 30154066-30154586 lincRNA
ENSG00000266505 (RP11-629E24.2)
 ENST00000585222 (RP11-629E24.2-001) 30022021-30023800 lincRNA
ENSG00000278172 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000619339 (Metazoa_SRP.1-465) 29864372-29864629 misc_RNA
ENSG00000279499 (RP11-490N5.3)
 ENST00000623049 (RP11-490N5.3-001) 30196443-30196881 TEC
CIL_0003E1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001687-ENSMUSG00000041298 CGP 10090 5:148504631-148995223
GeneTranscriptPositionBiotype
ENSMUSG00000001687 (Ubl3)
ubiquitin-like 3 		ENSMUST00000079324 (Ubl3-201) 148504631-148552788 protein_coding
ENSMUST00000164904 (Ubl3-202) 148505142-148552789 protein_coding
ENSMUSG00000041298 (Katnal1)
katanin p60 subunit A-like 1 		ENSMUST00000047257 (Katnal1-001) 148874332-148928647 protein_coding
ENSMUST00000110508 (Katnal1-002) 148885726-148929000 processed_transcript
ENSMUST00000110509 (Katnal1-003) 148893699-148929320 protein_coding
ENSMUST00000134031 (Katnal1-008) 148980438-148981093 processed_transcript
ENSMUST00000139269 (Katnal1-006) 148875683-148879079 processed_transcript
ENSMUST00000145042 (Katnal1-009) 148990056-148995223 processed_transcript
ENSMUST00000147473 (Katnal1-007) 148893775-148995147 protein_coding
ENSMUST00000149169 (Katnal1-005) 148904593-148928628 protein_coding
ENSMUST00000152360 (Katnal1-004) 148924621-148928665 processed_transcript
ENSMUST00000152575 (Katnal1-010) 148991082-148995215 processed_transcript
ENSMUSG00000079069 (8430423G03Rik)
RIKEN cDNA 8430423G03 gene 		ENSMUST00000110507 (8430423G03Rik-001) 148950250-148951658 protein_coding
ENSMUSG00000084513 (n-R5s179)
nuclear encoded rRNA 5S 179 		ENSMUST00000122564 (n-R5s179-201) 148753323-148753440 rRNA
ENSMUSG00000085237 (Gm15406)
predicted gene 15406 		ENSMUST00000133694 (Gm15406-001) 148948897-148996566 processed_transcript
ENSMUSG00000085455 (1810059H22Rik)
RIKEN cDNA 1810059H22 gene 		ENSMUST00000130154 (1810059H22Rik-004) 148964761-148970122 antisense
ENSMUST00000131347 (1810059H22Rik-003) 148958670-148969882 antisense
ENSMUST00000133693 (1810059H22Rik-001) 148953748-148960210 antisense
ENSMUST00000134251 (1810059H22Rik-002) 148958598-148959704 antisense
ENSMUSG00000085639 (Gm15410)
predicted gene 15410 		ENSMUST00000127763 (Gm15410-001) 148946592-148948866 antisense
ENSMUSG00000085740 (4930505K14Rik)
RIKEN cDNA 4930505K14 gene 		ENSMUST00000155504 (4930505K14Rik-001) 148777963-148783080 lincRNA
ENSMUSG00000086494 (2210417A02Rik)
RIKEN cDNA 2210417A02 gene 		ENSMUST00000150265 (2210417A02Rik-001) 148741840-148743139 lincRNA
ENSMUSG00000087272 (Gm15409)
predicted gene 15409 		ENSMUST00000135240 (Gm15409-001) 148959278-148961712 protein_coding
ENSMUSG00000087647 (Gm15407)
predicted gene 15407 		ENSMUST00000136919 (Gm15407-001) 148820767-148829408 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003E1_0001ENSG00000102781ENST00000380615ENST00000380617ENST00000414289ENST00000441394ENST00000480854ENSG00000122042ENST00000380680ENSG00000122043ENST00000400540ENST00000481738ENSG00000215049ENST00000450181ENSG00000224405ENST00000450264ENSG00000224511ENST00000413591ENST00000432770ENSG00000232117ENST00000437721ENSG00000232643ENST00000435044ENSG00000266505ENST00000585222ENSG00000278172ENST00000619339ENSG00000279499ENST00000623049CIL_0003E1_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003E1_0001ENSG00000102781ENST00000380615ENST00000380617ENSG00000122042ENST00000380680ENSG00000122043ENST00000400540ENST00000481738ENSG00000215049ENST00000450181ENSG00000224405ENST00000450264ENSG00000224511ENST00000413591ENST00000432770ENSG00000232117ENST00000437721ENSG00000232643ENST00000435044ENSG00000266505ENST00000585222ENSG00000278172ENST00000619339ENSG00000279499ENST00000623049CIL_0003E1_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102781 ENST00000380615 1.248±0.00 0.706±0.00 N/A 3.545±0.31 1.478±0.46 1.534±1.29 2.583±1.01 N/A 0.552±0.00 1.322±0.20 0.572±0.49 0.550±0.17 0.472±0.00 3.418±0.05
ENST00000380617 2.149±0.00 N/A N/A 14.004±0.00 3.219±0.18 2.173±0.00 4.887±0.00 N/A 5.580±0.00 3.356±0.00 0.982±0.30 1.196±0.48 0.438±0.05 22.121±14.32
ENST00000414289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122042 ENST00000380680 11.587±0.00 7.455±0.00 2.822±0.00 21.234±12.77 8.956±7.20 8.475±3.78 4.585±3.47 11.425±5.62 4.864±2.87 11.765±4.11 5.137±3.54 8.291±2.60 7.448±1.94 11.047±1.60
ENSG00000122043 ENST00000400540 N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A 0.071±0.00
ENST00000481738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.02
ENSG00000215049 ENST00000450181 N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.035±0.00 N/A 0.498±0.00 0.059±0.00 N/A N/A 0.032±0.00
ENSG00000224405 ENST00000450264 N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A 0.211±0.09
ENSG00000224511 ENST00000413591 N/A N/A N/A 0.018±0.00 0.091±0.00 0.027±0.00 N/A 0.021±0.01 0.047±0.04 0.230±0.05 N/A 0.101±0.07 0.053±0.04 N/A
ENST00000432770 N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A 0.040±0.00
ENSG00000232117 ENST00000437721 N/A 0.016±0.00 N/A 0.005±0.00 0.019±0.00 0.019±0.02 0.016±0.00 0.005±0.00 0.010±0.01 N/A N/A 0.020±0.00 N/A 0.140±0.00
ENSG00000232643 ENST00000435044 N/A N/A N/A 0.161±0.00 N/A 0.904±0.00 N/A N/A N/A N/A N/A N/A N/A 1.522±0.00
ENSG00000266505 ENST00000585222 N/A 0.009±0.00 N/A 0.048±0.00 N/A 0.042±0.00 N/A N/A N/A 0.188±0.00 N/A N/A N/A 0.032±0.00
ENSG00000278172 ENST00000619339 0.207±0.00 0.430±0.00 N/A 0.130±0.00 0.235±0.00 0.315±0.00 0.209±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000279499 ENST00000623049 0.061±0.00 0.431±0.00 N/A 0.404±0.00 0.304±0.01 N/A 0.124±0.00 N/A N/A 0.072±0.00 N/A 0.172±0.09 N/A 0.017±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001687 ENSMUST00000079324 10.829±3.52 12.562±3.53 12.263±0.69 8.788±1.47 6.098±2.81 16.119±3.89 10.462±2.69 18.459±2.21 5.439±2.74 20.882±3.66 19.701±1.10 17.770±4.80 6.507±3.37 10.630±2.33
ENSMUST00000164904 9.910±4.40 29.660±14.77 5.214±0.25 3.664±0.00 13.411±5.95 N/A 9.682±1.11 15.693±3.11 2.972±1.84 16.553±1.35 18.990±2.20 9.968±1.36 8.857±0.10 22.447±11.52
ENSMUSG00000041298 ENSMUST00000047257 1.571±0.20 0.727±0.04 1.738±0.00 8.608±4.56 0.938±0.28 0.566±0.12 1.751±0.41 2.157±1.10 1.400±0.97 0.942±0.19 1.034±0.21 2.090±0.99 1.281±0.29 15.023±0.73
ENSMUST00000110508 N/A N/A N/A N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000110509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.462±0.00
ENSMUST00000134031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145042 N/A 0.727±0.04 2.080±0.05 N/A N/A 0.641±0.00 0.367±0.00 1.319±0.00 0.461±0.20 N/A 0.442±0.00 1.232±0.14 0.410±0.00 N/A
ENSMUST00000147473 N/A N/A N/A 101.780±0.00 N/A N/A N/A N/A N/A N/A N/A 31.804±0.00 16.680±0.58 249.922±0.00
ENSMUST00000149169 N/A N/A N/A N/A 3.571±0.00 N/A N/A N/A N/A N/A N/A 6.237±0.27 N/A N/A
ENSMUST00000152360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152575 1.101±0.00 1.437±0.07 N/A N/A 1.820±0.00 0.798±0.25 N/A N/A 0.569±0.28 1.479±0.00 0.859±0.17 2.206±0.17 N/A N/A
ENSMUSG00000079069 ENSMUST00000110507 N/A 0.259±0.00 0.306±0.04 0.028±0.00 0.183±0.00 N/A N/A 0.063±0.00 0.077±0.07 N/A 0.090±0.02 0.343±0.00 0.132±0.08 N/A
ENSMUSG00000084513 ENSMUST00000122564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 70.086±0.00 N/A N/A
ENSMUSG00000085237 ENSMUST00000133694 0.934±0.04 2.802±0.74 N/A 0.104±0.00 1.404±0.00 N/A 0.225±0.07 1.274±0.19 0.447±0.10 N/A 0.374±0.24 1.470±0.50 N/A N/A
ENSMUSG00000085455 ENSMUST00000130154 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 0.191±0.06 0.800±0.76 0.134±0.04 N/A
ENSMUST00000131347 N/A N/A N/A N/A 1.197±0.12 N/A N/A N/A 0.679±0.00 0.348±0.00 0.159±0.04 1.036±0.61 0.152±0.08 N/A
ENSMUST00000133693 0.425±0.00 1.966±0.36 1.212±0.03 0.089±0.03 0.757±0.06 0.718±0.18 0.203±0.05 N/A 0.560±0.18 0.492±0.07 0.140±0.06 0.697±0.43 0.125±0.09 0.294±0.09
ENSMUST00000134251 0.516±0.00 0.964±0.28 0.994±0.00 N/A 0.296±0.01 0.487±0.09 0.461±0.20 6.738±1.08 2.089±1.21 0.130±0.00 0.285±0.05 0.253±0.11 0.344±0.27 2.268±0.00
ENSMUSG00000085639 ENSMUST00000127763 N/A 0.932±0.55 0.260±0.00 N/A 0.101±0.00 N/A 0.181±0.00 0.114±0.04 0.024±0.01 0.109±0.00 0.245±0.00 0.446±0.08 0.240±0.00 N/A
ENSMUSG00000085740 ENSMUST00000155504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 4.320±2.55
ENSMUSG00000086494 ENSMUST00000150265 0.094±0.00 N/A 0.039±0.02 N/A 0.364±0.00 0.980±0.66 N/A 0.106±0.01 1.036±0.79 0.128±0.00 N/A 0.200±0.12 0.139±0.10 0.128±0.03
ENSMUSG00000087272 ENSMUST00000135240 0.534±0.07 1.104±0.00 N/A N/A 0.677±0.05 1.246±0.26 0.659±0.14 5.271±0.93 2.484±1.09 N/A 0.395±0.16 1.104±0.75 0.255±0.13 2.834±0.00
ENSMUSG00000087647 ENSMUST00000136919 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.327±0.10 0.016±0.00 0.121±0.00

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